Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2546 196 6e-45 seq3272 174 2e-38 >seq2546 Length=134672 Score = 196 bits (216), Expect = 6e-45 Identities = 950/1488 (64%), Gaps = 31/1488 (2%) Strand=Plus/Plus Query 118143 TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGC 118202 |||||||| |||||||| ||||| || | ||||| ||| | ||||||||| Sbjct 38877 TTGACAACTTGGAACTCACCAGCGAGCACACGACGGGAGTAGATGTTGCTGGTGTATGGC 38936 Query 118203 TCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATG 118262 || |||||||| ||| |||| ||| || | ||||| || || |||||||| || | | Sbjct 38937 TCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGAAGCAGTTGGCATGGGAGCGACG 38996 Query 118263 AGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAG 118322 ||||| ||| |||| ||| | || || ||||||| ||| ||||||| || Sbjct 38997 AGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGCCTTGAGTGCGGCCCAGTCCCAG 39056 Query 118323 TTGAGCTTT----GTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGG 118378 || | | ||| | ||| ||||| || | || || || | ||| | || Sbjct 39057 A-GATCAGTAGGAGTCACACCC---CACATGTCGTATTGAAGCTCGCCCTTGGAGACGGG 39112 Query 118379 CGATCCCTCAAATGTCTCATATGGGCCCTCAACCT---CCGCCAATTCGGAGCTCGCCTC 118435 || ||||| ||||||| ||||| || || || | || | ||| | || Sbjct 39113 AGAGCCCTCGTATGTCTCGTATGGTCC---AAGCTTGGCAGCGAGATCGCATGAAGCGGT 39169 Query 118436 GAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT-TGCCTTGGCCTCGTCGG 118494 ||| || ||||| || || || || || || || || | || | |||||| | Sbjct 39170 GAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTGACG-GGCCTCAGGAG 39228 Query 118495 AATCAAACGCGAGTCGGC-ACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCA 118553 | || || | | || | || ||| |||| || ||||| | ||||||||| || Sbjct 39229 AGTCGAAAGGCATGCGAAGAGCCAAGAAAG-CATCGGCAAGACCATTGACACCGAGACCG 39287 Query 118554 ATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC-CACGGGATAAAAATTCCTATC 118612 || || ||||| | | || ||| ||||| ||| ||| || || || || Sbjct 39288 ATGGGACGATGACGGAAGTTGCTCTTGCGAGCC-TCTGGCACTGGGTAGTGGTTGACCTC 39346 Query 118613 GATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATC 118672 ||| | | | || | || |||||||| || ||||| | ||||||||||| | || Sbjct 39347 GATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGTGACCTGGTGAAGCTTTTCAAAGTC 39406 Query 118673 AAAACTGCGAGT-CTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACA 118731 || | || || ||| | |||||| | ||||| |||| || || || || |||| Sbjct 39407 GAAGC-GCTCGTTCTCGATGTCGACATAGGTGGGAAGAGCGAGAGATGCAAGGTTGCACA 39465 Query 118732 CAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAA 118791 | | | |||||| | |||||||||| || || || ||||| | ||| || || | Sbjct 39466 CGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGA 39525 Query 118792 TGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATG 118851 |||| ||||| ||||| || || ||| ||| || ||||||||||| || |||| Sbjct 39526 TGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTGTAAAGGATATATG 39585 Query 118852 GCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATCGGCAGCTGGCACA 118910 |||| || ||||| ||||| | || ||| || || | ||||| | || | ||| | || Sbjct 39586 GCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTCTG-AGCGCGGACG 39644 Query 118911 GTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCC 118970 || | | ||||| |||||| ||| || | || ||||| | || Sbjct 39645 GTCTCACGACCCTTGCCCTCACGCTCGTATCGCTCGTACAGCTCCTCGAACTCAGCGCCG 39704 Query 118971 ACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCC 119030 | | || | || || || || | ||||| | | || ||| | | | Sbjct 39705 TAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTCCAGGTGGTATTTTGC 39764 Query 119031 TCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGA 119090 ||||| |||||||||||||| ||||||| ||| || | |||| ||||| ||| ||| Sbjct 39765 TCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTAGAACAGATCGCGAGCACGA 39824 Query 119091 GCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCAC 119150 | || || | || || || || | ||||| ||| | || ||| |||||||| Sbjct 39825 ACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGAGAAGACATCTGCGTGCCAT 39884 Query 119151 GGTTCCAGGTACACCGCGATTGACCCCTTACG---ACGACCAGCCTGGTTTACATACCTC 119207 || || | ||||| || | | || || | || |||||| || || | Sbjct 39885 GGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGA 39944 Query 119208 GCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCC 119267 || ||| |||||| ||||| ||||| || | || ||| | |||| || || || || Sbjct 39945 GCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTTGGATGTTCCGTTGGTGCCG 40004 Query 119268 CGAATACGAGACTTATTGGCTCTGACATC-GTGGATGTGCATACCAATACCCCCTGCCCA 119326 | || | | || | || || ||||| || | ||||| || || || Sbjct 40005 CTGATGTATGCTCCGGTTGCGC-GAATTCTGTGGACGTTGAGCCCAATGCCTCCGGCGTT 40063 Query 119327 CTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT 119386 ||| ||||| ||||| | | || || ||||||||||||| || |||| |||| Sbjct 40064 CTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGATCCCATCAATACTGTCATCCTT 40123 Query 119387 ATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGT 119446 | |||||||||||||| | || |||| ||||||| ||||| |||| || || Sbjct 40124 CATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGTTCCAGCACTGAACAGCGT 40183 Query 119447 TGGTGTCGCGTGGATGAACATACCT-TGGGACATCTTGTCGTAGGTCTCCAAGACGGCGG 119505 || | ||| || |||| ||| | | ||||| | || ||||||||| | | | | Sbjct 40184 GGGCGACGCATGTGTGAA-GTACTTGTTCGACATGTAGTTGTAGGTCTCAATGGCAGACT 40242 Query 119506 GAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCA 119565 |||||| || ||||| || || | | || ||||| | ||| | ||| ||| |||| Sbjct 40243 CAATGTCCTCGCCGTGGATTCCCACAGCCACACGCATGATCATCTGTTGTGGTCTTTCGG 40302 Query 119566 TCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGA 119613 | | |||| || |||| ||||| | |||||| ||||||| Sbjct 40303 CAACCTTGCCATTGATCCTCAAAAGGTATGACCTCTCCAGCGTCTTGA 40350 >seq3272 Length=75414 Score = 174 bits (192), Expect = 2e-38 Identities = 545/821 (66%), Gaps = 31/821 (4%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCT-GATATTCTCCAT 129786 ||||| || || ||||||||||||||||| ||||| || ||| || ||| |||||||| Sbjct 16190 TAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCC-TCCGAGAGAGATGTTCTCCAT 16248 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAAT--CTGTTTGAGGAG 129843 ||||| || ||||| | | ||| | | |||| | | | | | |||||| Sbjct 16249 GAAATCGAAGGGGTTGGTGGCGTTGTAGTGCTTCTGGTTGCCGAGTGCCAG---GAGGAG 16305 Query 129844 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTT 129903 |||||| | |||| |||| ||||| | |||| || || |||||| |||| ||| Sbjct 16306 ACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGCGC 16365 Query 129904 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGC 129963 ||||||||| ||||| || |||| ||| ||| ||| | ||||| || | |||| | Sbjct 16366 ACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATGTC 16425 Query 129964 GTGAA-----TGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCA 130018 | || |||| | || | || | ||| | || ||| || |||| Sbjct 16426 TTCAACCACTTGGTTTGA-TGGCTTGT-TGTTGAGATGAGA---GAACAGCAGGCAGGCA 16480 Query 130019 AACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGC 130078 || || ||| | ||||| |||||||| ||||| || || ||||| || || ||| Sbjct 16481 AAGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGGC 16540 Query 130079 ATGAGACCCCGCTTCTTCAACCAGAAAATCG-CACAAAATGAGCCAGAGAAGAAGATCCC 130137 |||||||| ||||||||||||||||| |||| | | ||| || || ||||||||||| || Sbjct 16541 ATGAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAA-GATCCGGAGAAGAAGATGCC 16599 Query 130138 CTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCA-AACC 130196 || | || || || | |||||| ||||||| | | | |||| | | || Sbjct 16600 TTCGATGGCGGCAAAGGCGATGAGACGGCAGGCAAAGGTG-GAGTTCTTGTCGGAGATCC 16658 Query 130197 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 130256 | || |||||| | ||||| || ||| || |||| | | | ||| || | |||| Sbjct 16659 ATCGCAGCGCCCAGTCAGCCTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTGAAGA 16718 Query 130257 -GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCG 130315 || | | | || || || || ||||||| | || ||||| || ||||| ||| Sbjct 16719 GGTACGTGCGTTGCT-TGGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATGTCTCG 16777 Query 130316 CCATGGACCAT-TTCATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTG 130374 |||| | | ||| || | ||| | ||||||| |||| || ||| || || Sbjct 16778 GAGTGGATGTTCTCCATCAT-GATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGATTTG 16836 Query 130375 TACCTCATCTGCAAAATTG-TTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAA 130433 || || || || || | | ||| ||||| || || ||||| || |||| | Sbjct 16837 CACTTC-TCCGCTGAAGCGCTCGATGAGGTTCTCGTTGACGATGCCATCCGAAGCAGCGA 16895 Query 130434 AAAACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGG---GTCTTCCAGT 130490 | || ||||||| | ||||| | || | ||||||||| | ||||||| Sbjct 16896 AGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCAGGCGCTTGTTCCAGT 16955 Query 130491 CGTCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAA 130531 ||| ||| ||||| |||||||| | |||||| ||||||||| Sbjct 16956 CGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCAGTCCAA 16996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618409071112800