Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2546 230 3e-55 seq3272 89.7 6e-13 >seq2546 Length=134672 Score = 230 bits (254), Expect = 3e-55 Identities = 907/1404 (65%), Gaps = 41/1404 (3%) Strand=Plus/Minus Query 104216 GAAACCCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGAT 104275 |||| ||||| | ||| ||||||| ||||| | || || || || || |||||||| Sbjct 40300 GAAAGACCACAACAGATGATCATGCGTGTGGCTGTGGGAATCCACGGCGAGGACATTGAG 40241 Query 104276 TCTGTCTTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAAC 104334 |||| | | ||||| ||| || | ||||| | | ||| |||| || || | || || Sbjct 40240 TCTGCCATTGAGACCTACAACTACATGTCGAACAAGTAC-TTCACACATGCGTCGCCCAC 40182 Query 104335 CCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAA 104394 || |||| |||||| ||||| | | || || | |||||||| |||| || || Sbjct 40181 GCTGTTCAGTGCTGGAACACCCAACGCTCAGCTGGCATCCTGCTTCCTCATCGACATGAA 40122 Query 104395 GGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTG 104454 ||| ||| || | || ||||| | || || | | || || ||||| ||| Sbjct 40121 GGATGACAGTATTGATGGGATCTACGACACACTGAAGACCTGCGCCATGATCTCTAAGAA 40062 Query 104455 GGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGG 104514 || || || |||||| | || |||| | | || | | | || | || Sbjct 40061 CGCCGGAGGCATTGGGCTCAACGTCCACAGAATTCGCGCAACCGGAGCATACATCAGCGG 40002 Query 104515 GACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCG 104574 || || || ||| | ||| | | || ||||| || || |||||| ||| || || Sbjct 40001 CACCAACGGAACATCCAACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCG 39942 Query 104575 CTATGTAAATCAAGCTGGGCGTCGA-AAGGGATCTATCGCAGTC------TATCTTGAGC 104627 ||| || | || ||||| | | ||| || || ||| | || | |||| Sbjct 39941 CTACGTCGACCA----GGGCGGCAATAAGCGACCTGGCGCCTTTGCCATGTACATCGAGC 39886 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 |||||||||| ||| || | ||| | || | || ||||| || | ||||||| Sbjct 39885 CATGGCACGCAGATGTCTTCTCCTTCTTGGATCTCCGCAAGAACCACGGAAAGGAGGAGG 39826 Query 104688 CGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTT 104746 || ||| |||||||| |||| || ||| ||| | |||||||||||||||||| | ||| Sbjct 39825 TTCG-TGCTCGCGATCTGTTCTACGGTCTGTGGGTCCCAGATCTCTTCATGAAGCGTGTT 39767 Query 104747 GAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCC 104806 ||| | | | || ||| || | | || || || || || ||||| | |||| | Sbjct 39766 GAGCAAAATACCACCTGGACTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTGATGTC 39707 Query 104807 GTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCG 104866 || | ||||| || | || ||| |||||| || || || || | Sbjct 39706 TACGGCGCTGAGTTCGAGGAGCTGTACGAGCGATACGAGCGTGAGGGCAAGGGTCGTGAG 39647 Query 104867 ACGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTAC 104925 || || | ||| | || | | ||| | || || ||| || ||||||||||||| || || Sbjct 39646 ACCGTCCGCGCT-CAGAAGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGCAC 39588 Query 104926 ACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGT 104985 ||||| || |||||||| ||||| ||| ||||| || || ||||||||||| Sbjct 39587 GCCATATATCCTTTACAAGGACGCTGCCAACGGCAAGAGCAACCAGAAGAATTTGGGAAC 39528 Query 104986 GATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGC 105045 ||| || ||||| ||||| || || ||| | || | || | |||||| || Sbjct 39527 CATCCGCAGCTCCAACCTCTGCACCGAGATCATCGAGTACACTGCTCCTGATGAGGTCGC 39468 Query 105046 TGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATT 105105 ||||| ||||| ||||| ||||||| |||| ||||| || |||| || || Sbjct 39467 CGTGTGCAACCTTGCATCTCTCGCTCTTCCCACCTATGTCGACATCGAGAACGAGCGCTT 39408 Query 105106 TGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTAT 105165 || | |||||| || ||| | || || | || |||||||| ||| | |||| | || Sbjct 39407 CGACTTTGAAAAGCTTCACCAGGTCACACAGACCGTCACCAAGAACTTGAACAAGATCAT 39348 Query 105166 TGATAGAAATTTTTACCCCGT-TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 || || ||||| || ||| ||||| || || | | || ||||| | Sbjct 39347 CGAGGTCAACCACTACCCAGTGCCAGA-GGCTCGCAAGAGCAACTTCCGTCATCGTCCCA 39289 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTT-GAT 105283 | ||||||||||| | ||||| || |||| ||| | | ||| || || ||| || Sbjct 39288 TCGGTCTCGGTGTCAATGGTCTTGCCGATGCTTTCTTGGCTCTTCG-CATGCCTTTCGAC 39230 Query 105284 TCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCT--- 105340 || || || | |||| | || || |||||||| || ||||| ||| Sbjct 39229 TCTCCTGAGGCCCGTCAGCTCAACATTCAGATCTTCGAGACCATCTACCACGCTGCTCTC 39170 Query 105341 ----CTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396 ||| | |||| || | || || || | ||| ||||| || || | ||||| Sbjct 39169 ACCGCTTCATGCGATCTC---GCTGCCA-AGCT---TGGACCATACGAGACATACGAGGG 39117 Query 105397 TTCTCCAGCTTCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCT-- 105453 ||||| | || |||||| | |||||||| || ||||||| |||| || | || Sbjct 39116 CTCTCCCGTCTC-CAAGGGCGAGCTTCAATACGACATGTGGG-GTGTGACTCCTA-CTGA 39060 Query 105454 TCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCT 105513 || || ||||||| || ||||||| ||| ||| | ||| | || ||| || Sbjct 39059 TCTCTGGGACTGGGCCGCACTCAAGGCCAAGATCGCCGAGCATGGTGTCCGCAACTCGCT 39000 Query 105514 CCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTT 105573 ||| | ||||| |||||||| || |||||| | || ||| |||| || || ||||| Sbjct 38999 TCTCGTCGCTCCCATGCCAACTGCTTCCACCTCGCAGATCATGGGCTTCAACGAGTGCTT 38940 Query 105574 TGAACCCTACACGACGAACATCTA 105597 || || ||||| | |||||||| Sbjct 38939 CGAGCCATACACCAGCAACATCTA 38916 >seq3272 Length=75414 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 ||||||| || ||| |||| ||||| | || || ||||||||||| || || | Sbjct 16637 CCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTCTTCTCCGGATCTT 16578 Query 94856 TCTGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 || ||| | || | ||| | |||||||| ||||||||||| || ||| ||||||||| Sbjct 16577 TC-GCGTCGATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTCACTTTCTCCAAC 16519 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||| || || ||||| ||||| | ||| || ||||| Sbjct 16518 GAGCTCATTTCCCGTGATGAGGGCATGCACACCGACTTTGC 16478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583236157231200