Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq1648 163 9e-35 seq2317 113 1e-19 seq2448 95.1 4e-14 >seq1648 Length=145799 Score = 163 bits (180), Expect = 9e-35 Identities = 482/737 (65%), Gaps = 12/737 (2%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 || || || |||||||| ||||| || || || ||||| | | | | |||| || Sbjct 57995 GCAATCGGTATCGATTTGGGTACGACCTACTCCTGTGTGGGCATCTACAGAGATGACCGC 58054 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | || || || || || || || |||||| | ||||| || || | ||| || || ||| Sbjct 58055 ATTGAGATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCGTTCGTCGCCTTCACC 58114 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || ||||| | |||||||| || ||||| || |||| || || ||| || Sbjct 58115 GACACCGAGCGCCTCATTGGTGACTCCGCAAAGAACCAAGTCGCCATGAACCCAGTCAAC 58174 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434 || ||||| || || ||||| || || || | ||||| ||| | || || Sbjct 58175 ACAGTTTTCGACGCCAAGCGCCTGATCGGCCGGAAGTTC----GACGATGCTGAGGTGCA 58230 Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494 | || | || || || || || | || | ||| | | |||| || || | | Sbjct 58231 GGCCGACATGAAGCACTTCCCATTCAAGGTCAT--CAACA-AGGGTGGCAAGCCGGTCGT 58287 Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554 |||| || | ||||| || | || || ||| |||||| || |||||||||||||| Sbjct 58288 GCAGGTCGAGTTCAAAGGCGAGGAGAAGCAGTTTACACCCGAGGAGATTTCATCAATGGT 58347 Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614 | || ||| || | ||| || ||||| | |||| || || | | || || Sbjct 58348 CCTCACAAAGATGCGCGAGACTGCGGAGGCATACCTTGGTGGGACTGTCAACAACGCCGT 58407 Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674 | | ||||| ||||| || || || || | ||||| ||||| || || ||||| Sbjct 58408 TGTCACTGTTCCAGCATACTTCAACGACTCGCAGCGCCAAGCAACCAAGGACGCTGGTCT 58467 Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734 ||| || || | || || || | || || || || || || || || || ||||| || Sbjct 58468 CATCGCCGGCCTGAACGTCCTGCGCATCATCAACGAGCCTACCGCCGCTGCCATTGCCTA 58527 Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794 ||| || || || | || ||| || || | || || || ||||| |||||||| Sbjct 58528 TGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGATTTGGGTGGTGG 58587 Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854 ||| || ||||| || || || || | || ||||| || || || || || | ||||| Sbjct 58588 TACCTTCGATGTTTCCCTTCTCACCATCGAGGAGGGCATCTTCGAGGTCAAGTCCACTGC 58647 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 ||| || || || | ||||| || || || || || || || || || || ||||| Sbjct 58648 TGGAGACACCCACTTGGGTGGCGAGGACTTCGACAACCGCCTTGTCAACCACTTCGTTAA 58707 Query 349915 AGAATTTAAGCGTCAAG 349931 || || || || |||| Sbjct 58708 TGAGTTCAAACG-CAAG 58723 >seq2317 Length=245020 Score = 113 bits (124), Expect = 1e-19 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || || | || ||||| ||||| || || || || || || Sbjct 71654 CATACCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 71713 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 | || |||||||| |||||||| || || || ||||| || || ||||| || || Sbjct 71714 GCTGAGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGG 71773 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685 |||||| || || || ||||| || || ||| || ||||| || || | ||| || | | Sbjct 71774 AGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTATCCGAGGACT 71832 Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719 |||| ||||| || | |||||||| || | ||| Sbjct 71833 CAACCTCAAGGGTGATGGTCTTTCCAGTCACTGT 71866 Score = 109 bits (120), Expect = 2e-18 Identities = 165/235 (70%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || |||||||| || ||||| || ||||| || | Sbjct 71422 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGT 71481 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || | || || || || |||||||| || || || ||||| | || || || | Sbjct 71482 AGTCGGAGAGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGT 71541 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 | || ||||| || || || ||||| || || | || ||||| || || | || || | Sbjct 71542 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACG 71601 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | || | ||||| || || || || || || || |||||||| Sbjct 71602 ACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 >seq2448 Length=190995 Score = 95.1 bits (104), Expect = 4e-14 Identities = 242/368 (66%), Gaps = 3/368 (1%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| ||| | || | ||| || | | || |||||||| | || || | || | Sbjct 114456 CCCGAGGAAGTCTCCGCCATGATTCTCGGAAAGATGAAGGAGGTCGCCGAGTCCTACCTC 114397 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || || | || || | || || | ||||| |||||||| || || || || |||||| Sbjct 114396 GGAGAGAAGGTCACCAACGCAGTCGTCACTGTTCCAGCCTACTTCAACGACGCTCAGCGT 114337 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 | || || || ||||| ||| || || || | || ||||| | || | || || Sbjct 114336 GCCGCCACCAAGGATGCCGGCGCGATCGCTGGTCTCAACGTTCTCCGCGTGGTCAACGAG 114277 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771 ||||| || || || | || || || || || || || ||| | ||| | || Sbjct 114276 CCCACCGCCGCCGCTTTGGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 114220 Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831 | | | ||| | ||||||||||| || ||||| || | || || | || |||| Sbjct 114219 ATCGTCTACGATCTCGGTGGTGGTACCTTCGATGTCTCCGTCCTGACCGTCGACCAGGGT 114160 Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891 | || || ||| || | || || |||||||| ||||| ||||| || ||||| || | Sbjct 114159 GTGTTCGAGGTTCAATCTACCGCCGGTGATACCCATCTCGGTGGTGAGGATTTCGACCAG 114100 Query 349892 CGTCTCGT 349899 ||| |||| Sbjct 114099 CGTGTCGT 114092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515188780014140