Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq1648 163 9e-35
seq2317 113 1e-19
seq2448 95.1 4e-14
>seq1648
Length=145799
Score = 163 bits (180), Expect = 9e-35
Identities = 482/737 (65%), Gaps = 12/737 (2%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
|| || || |||||||| ||||| || || || ||||| | | | | |||| ||
Sbjct 57995 GCAATCGGTATCGATTTGGGTACGACCTACTCCTGTGTGGGCATCTACAGAGATGACCGC 58054
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
| || || || || || || || |||||| | ||||| || || | ||| || || |||
Sbjct 58055 ATTGAGATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCGTTCGTCGCCTTCACC 58114
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || ||||| | |||||||| || ||||| || |||| || || ||| ||
Sbjct 58115 GACACCGAGCGCCTCATTGGTGACTCCGCAAAGAACCAAGTCGCCATGAACCCAGTCAAC 58174
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAG-AAGTTTTTCTGACAAATCTACA---CA 349434
|| ||||| || || ||||| || || || | ||||| ||| | || ||
Sbjct 58175 ACAGTTTTCGACGCCAAGCGCCTGATCGGCCGGAAGTTC----GACGATGCTGAGGTGCA 58230
Query 349435 ATCTGATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTAT 349494
| || | || || || || || | || | ||| | | |||| || || | |
Sbjct 58231 GGCCGACATGAAGCACTTCCCATTCAAGGTCAT--CAACA-AGGGTGGCAAGCCGGTCGT 58287
Query 349495 TGAGGTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGT 349554
|||| || | ||||| || | || || ||| |||||| || ||||||||||||||
Sbjct 58288 GCAGGTCGAGTTCAAAGGCGAGGAGAAGCAGTTTACACCCGAGGAGATTTCATCAATGGT 58347
Query 349555 TTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGT 349614
| || ||| || | ||| || ||||| | |||| || || | | || ||
Sbjct 58348 CCTCACAAAGATGCGCGAGACTGCGGAGGCATACCTTGGTGGGACTGTCAACAACGCCGT 58407
Query 349615 TATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAG 349674
| | ||||| ||||| || || || || | ||||| ||||| || || |||||
Sbjct 58408 TGTCACTGTTCCAGCATACTTCAACGACTCGCAGCGCCAAGCAACCAAGGACGCTGGTCT 58467
Query 349675 CATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATA 349734
||| || || | || || || | || || || || || || || || || ||||| ||
Sbjct 58468 CATCGCCGGCCTGAACGTCCTGCGCATCATCAACGAGCCTACCGCCGCTGCCATTGCCTA 58527
Query 349735 TGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGG 349794
||| || || || | || ||| || || | || || || ||||| ||||||||
Sbjct 58528 TGGTCTCGACAAGAAGACTGAGGGCGAGCGCAACGTGCTCATCTTCGATTTGGGTGGTGG 58587
Query 349795 TACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGC 349854
||| || ||||| || || || || | || ||||| || || || || || | |||||
Sbjct 58588 TACCTTCGATGTTTCCCTTCTCACCATCGAGGAGGGCATCTTCGAGGTCAAGTCCACTGC 58647
Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914
||| || || || | ||||| || || || || || || || || || || |||||
Sbjct 58648 TGGAGACACCCACTTGGGTGGCGAGGACTTCGACAACCGCCTTGTCAACCACTTCGTTAA 58707
Query 349915 AGAATTTAAGCGTCAAG 349931
|| || || || ||||
Sbjct 58708 TGAGTTCAAACG-CAAG 58723
>seq2317
Length=245020
Score = 113 bits (124), Expect = 1e-19
Identities = 155/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566
|||||||||||| | | || || | || ||||| ||||| || || || || || ||
Sbjct 71654 CATACCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 71713
Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626
| || |||||||| |||||||| || || || ||||| || || ||||| || ||
Sbjct 71714 GCTGAGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGG 71773
Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTT 140685
|||||| || || || ||||| || || ||| || ||||| || || | ||| || | |
Sbjct 71774 AGGAATGCCCTCCTTGTCCTGGATCTT-GCTCTTCACATTGTCGATGGTATCCGAGGACT 71832
Query 140686 CAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGT 140719
|||| ||||| || | |||||||| || | |||
Sbjct 71833 CAACCTCAAGGGTGATGGTCTTTCCAGTCACTGT 71866
Score = 109 bits (120), Expect = 2e-18
Identities = 165/235 (70%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562
||| |||||||||||| | | || || |||||||| || ||||| || ||||| || |
Sbjct 71422 TTTGCATACCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGT 71481
Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622
| || || | || || || || |||||||| || || || ||||| | || || || |
Sbjct 71482 AGTCGGAGAGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGT 71541
Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682
| || ||||| || || || ||||| || || | || ||||| || || | || || |
Sbjct 71542 CTGGGGGAATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACG 71601
Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
|| || || | || | ||||| || || || || || || || ||||||||
Sbjct 71602 ACTCCACCTCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656
>seq2448
Length=190995
Score = 95.1 bits (104), Expect = 4e-14
Identities = 242/368 (66%), Gaps = 3/368 (1%)
Strand=Plus/Minus
Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591
||||| ||| | || | ||| || | | || |||||||| | || || | || |
Sbjct 114456 CCCGAGGAAGTCTCCGCCATGATTCTCGGAAAGATGAAGGAGGTCGCCGAGTCCTACCTC 114397
Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651
|| || | || || | || || | ||||| |||||||| || || || || ||||||
Sbjct 114396 GGAGAGAAGGTCACCAACGCAGTCGTCACTGTTCCAGCCTACTTCAACGACGCTCAGCGT 114337
Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711
| || || || ||||| ||| || || || | || ||||| | || | || ||
Sbjct 114336 GCCGCCACCAAGGATGCCGGCGCGATCGCTGGTCTCAACGTTCTCCGCGTGGTCAACGAG 114277
Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATT 349771
||||| || || || | || || || || || || || ||| | ||| | ||
Sbjct 114276 CCCACCGCCGCCGCTTTGGCCTACGGCCTCGACAA---GACCGACAAGGAACGCCAGATC 114220
Query 349772 CTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGA 349831
| | | ||| | ||||||||||| || ||||| || | || || | || ||||
Sbjct 114219 ATCGTCTACGATCTCGGTGGTGGTACCTTCGATGTCTCCGTCCTGACCGTCGACCAGGGT 114160
Query 349832 ATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAAT 349891
| || || ||| || | || || |||||||| ||||| ||||| || ||||| || |
Sbjct 114159 GTGTTCGAGGTTCAATCTACCGCCGGTGATACCCATCTCGGTGGTGAGGATTTCGACCAG 114100
Query 349892 CGTCTCGT 349899
||| ||||
Sbjct 114099 CGTGTCGT 114092
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515188780014140
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |