Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2546 374 1e-98 seq3272 132 5e-26 >seq2546 Length=134672 Score = 374 bits (414), Expect = 1e-98 Identities = 920/1379 (67%), Gaps = 36/1379 (3%) Strand=Plus/Plus Query 78534 GTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGA 78593 |||||||||| | ||||| |||||||| ||||||| ||||||||||| | ||| || Sbjct 38915 GTAGATGTTGCTGGTGTATGGCTCGAAGCACTCGTTGAAGCCCATGATCTGCGAGGTGGA 38974 Query 78594 GGCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATCTCGAC 78653 || || |||||||| ||||| || || || || || | ||||||| ||||| | | Sbjct 38975 AGCAGTTGGCATGGGAGCGACGAGAAGCGAGTTGCGGACACCATGCTCGGCGATCTTGGC 39034 Query 78654 CTTTAG----GCC--GTCCCAAAATTCATTCGCCGCGATCCCCCACATGTCCGGTTGAAG 78707 ||| || ||| |||||| | ||| | | | | ||||||||||| |||||| Sbjct 39035 CTTGAGTGCGGCCCAGTCCCAGAGATCAGTAGGAGTCACACCCCACATGTCGTATTGAAG 39094 Query 78708 GATACCCTCGGACGCCGGCGACCCCTTGAACGTCTCGTAAGATCCCTCCTCCTTGGCGAG 78767 |||| ||| | || || |||| | | |||||||| | ||| || ||||| Sbjct 39095 CTCGCCCTTGGAGACGGGAGAGCCCTCGTATGTCTCGTATGGTCCAAGCTTGGCAGCGAG 39154 Query 78768 TTCGCATGACTCGAGCAGGGCCGCGTGGTACACAGCCTCGAAGATGCCCTTGTTGAGCTC 78827 |||||||| || || || |||||||| | | ||||||||| ||||||||| Sbjct 39155 ATCGCATGAAGCGGTGAGAGCAGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTG 39214 Query 78828 GCGCGCCTTGGTCTCGTCGAACGAAAGGCCGAGCATCATGAAGACATCGGCCAGGCCCTG 78887 || |||| | |||||| | | || || || ||| ||||||| || || | Sbjct 39215 ACGGGCCTCAGGAGAGTCGAAAGGCATGCGAAGAGCCAAGAAAGCATCGGCAAGACCATT 39274 Query 78888 GACGCCGATAGCGATCGGTCGGTGGCGCATGTTGCTCTTTCGGGCCGCCTCGGTC-GGGT 78946 ||| |||| | |||| || || || || | ||||||||| || ||| | | | | |||| Sbjct 39275 GACACCGAGACCGATGGGACGATGACGGAAGTTGCTCTTGCGAGCCTC-TGGCACTGGGT 39333 Query 78947 AAAAGTTCCGATCGATGACGCGGTTCAGGTTACGCGTGACGACCCGAGTCACCTCGTACA 79006 | ||| ||||||| ||||| ||| |||||| | | || |||| || | Sbjct 39334 AGTGGTTGACCTCGATGATCTTGTTCAAGTTCTTGGTGACGGTCTGTGTGACCTGGTGAA 39393 Query 79007 ATTTGGCGAAATCAAAATGAT--TTC-CTTTGATGAAAGTCGGTAGGCACAGCGA----T 79059 || | || || || | | ||| | || || | | ||| || | ||||| | Sbjct 39394 GCTTTTCAAAGTCGAAGCGCTCGTTCTCGATGTCGACA-TAGGTGGGAAGAGCGAGAGAT 39452 Query 79060 GCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAA 79119 || |||||||||||||| ||| || || || ||||||||| || ||||| | Sbjct 39453 GCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTACTCGATGATCTCGGTGCAGAGG 39512 Query 79120 TTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTG 79179 || || |||||| || | ||||||||||||||||| |||| ||||||||| Sbjct 39513 TTGGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTCTTGCCGTTGGCAGCGTCCTTG 39572 Query 79180 TAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCC 79239 || || || ||||| |||||||| ||| || ||| | | | | ||||| | | Sbjct 39573 TAAAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCGAGGATGGCATACCAGAGCTTC 39632 Query 79240 CGGGCCCGGACAACCTTCTTGTACCGACCCTGTGCG---ACGTACGTC-CG---GTACAA 79292 | || ||||| || ||||||| ||| ||| ||| || ||||| Sbjct 39633 TGAGCGCGGACGGTCTCA------CGACCCT-TGCCCTCACGCTCGTATCGCTCGTACAG 39685 Query 79293 CTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAG 79352 ||| | ||| | | || |||||||| | ||| || ||||||||||| |||||||||| Sbjct 39686 CTCCTCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAA 39745 Query 79353 GTGCCAGTCCTCGTCCTT--CTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410 |||| | || || |||||| || ||||||||| || |||| |||||| || Sbjct 39746 AGTCCAGG--TGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGA-CC 39802 Query 79411 GT-GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAA 79469 || ||| || ||||| ||| | |||||| | || |||||| || || || | || Sbjct 39803 GTAGAACAGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAA 39862 Query 79470 GTCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCC 79529 | | || || |||||||| ||||| | || ||||| || | || ||||| Sbjct 39863 GGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATT 39922 Query 79530 GCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCC 79589 ||||||||||| |||||| || || |||||||| || || || |||||||| |||| || Sbjct 39923 GCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACC 39982 Query 79590 GTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTG 79649 || || ||||| || ||| |||| || ||| | || ||||| | | || Sbjct 39983 GTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGTT 40042 Query 79650 GATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGAT 79709 || || ||||| |||| ||| ||||| ||||| ||| || || |||||||| Sbjct 40043 GAGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGAT 40102 Query 79710 GCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTT 79769 || || || ||| |||||||| ||| ||||||||| | || ||| | |||| Sbjct 40103 CCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGG 40162 Query 79770 CGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATC 79829 || || || |||| || || |||| ||| || |||||| |||| | ||| | Sbjct 40163 TGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGTTCGACATGTAGTT 40222 Query 79830 GTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATGA 79888 ||| ||||| || | | | ||| ||||||||||| || || || || ||||||| Sbjct 40223 GTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCACACGCATGA 40281 Score = 365 bits (404), Expect = 5e-96 Identities = 1126/1725 (65%), Gaps = 35/1725 (2%) Strand=Plus/Minus Query 19116 TCATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCGC----GAGACA 19171 ||||||| || || || || ||||| ||||| ||| | ||||| || ||||| Sbjct 40281 TCATGCGTGTGGCTGTGGGAATCCACGGCGAGGACATT----GAGTCTGCCATTGAGACC 40226 Query 19172 TACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGT 19231 ||| || ||| | |||| |||||| || ||| |||| || || |||| || || Sbjct 40225 TACAACTACATGTCGAACAAGTACTTCACACATGCGTCGCCCACGCTGTTCAGTGCTGGA 40166 Query 19232 ACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAG 19291 || |||| | ||| || | ||| ||||| | | |||||||||||||| ||||| Sbjct 40165 ACACCCAACGCTCAGCTGGCATCCTGCTTCCTCATCGACATGAAGGATGACAGTATTGAT 40106 Query 19292 GGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGG 19351 || |||||||| || || ||| ||||| ||||| ||| |||| || || ||| Sbjct 40105 GGGATCTACGACACACTGAAGACCTGCGCCATGATCTCTAAGAACGCCGGAGGCATTGGG 40046 Query 19352 ATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCC 19411 || || | | || || | | || || |||| || || |||||| | || Sbjct 40045 CTCAACGTCCACAGAATTCGCGCAACCGGAGCATACATCAGCGGCACCAACGGAACATCC 39986 Query 19412 GACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGG 19471 ||||| |||| || ||||| || || || |||||||| || | |||||| ||||||| Sbjct 39985 AACGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCGCTACGTCGACCAGGGC 39926 Query 19472 GGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATG 19531 ||| || || ||| | || ||||| ||| |||||||||||||||| || ||| | Sbjct 39925 GGCAATAAGCGACCTGGCGCCTTTGCCATGTACATCGAGCCATGGCACGCAGATGTCTTC 39866 Query 19532 GATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTC 19591 ||| | || || ||| |||||| || | |||||| | || |||||| || ||| Sbjct 39865 TCCTTCTTGGATCTCCGCAAGAACCACGGAAAGGAGGAGGTTCGTGCTCGCGATCTGTTC 39806 Query 19592 -ACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAG--AAGGACGAAGAATGG 19648 |||| | ||||| | || || || |||||| || |||||| || || | ||| Sbjct 39805 TACGGTC-TGTGGGTCCCAGATCTCTTCATGAAGCGTGTTGAGCAAAATACCA--CCTGG 39749 Query 19649 CACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAAT 19708 |||||||||| ||||| ||||| || || | || |||||||||| | |||| | Sbjct 39748 ACTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTGATGTCTACGGCGCTGAGTTCGAG 39689 Query 19709 GAGTTGTACCGGACTTACGTAGC-CCAGGGC-CGGTTCAAGAAGGTGGTCCGGGCCCGGG 19766 ||| ||||| | |||| ||| ||||| || || | || ||||| || | | Sbjct 39688 GAGCTGTACGAGCGATACG-AGCGTGAGGGCAAGGGTCGTG-AGACCGTCCGCGCTCAGA 39631 Query 19767 ACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACA 19826 | ||||| | | ||||| | || |||||||||||| || || || |||| Sbjct 39630 AGCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGCACGCCATATATCCTTTACA 39571 Query 19827 AGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACC 19886 ||||||| || |||| |||| || |||||||| | || | ||| ||||||| Sbjct 39570 AGGACGCTGCCAACGGCAAGAGCAACCAGAAGAATTTGGGAACCATCCGCAGCTCCAACC 39511 Query 19887 TGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGT 19946 | || || || ||||| ||| | || || ||| |||||||| || || || | Sbjct 39510 TCTGCACCGAGATCATCGAGTACACTGCTCCTGATGAGGTCGCCGTGTGCAACCTTGCAT 39451 Query 19947 CCCTGTGCCTGCCGAC---TTTCG---TCAAGGCCTCCTCCTTCGACTTTGCCAAATTGT 20000 | || || || || | ||| || || | ||||||||||| || | Sbjct 39450 CTCTCGCTCTTCCCACCTATGTCGACATCGAGAACGAGCGCTTCGACTTTGAAAAGCTTC 39391 Query 20001 ACGAGGTGACCCGGGTCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACC 20060 || |||| || | | |||||| || |||| ||||||| ||| |||| Sbjct 39390 ACCAGGTCACACAGACCGTCACCAAGAACTTGAACAAGATCATCGAGGTCAACCACTACC 39331 Query 20061 C-GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAG 20119 | | | | | ||| |||||| || | || || || || |||| |||| ||| | Sbjct 39330 CAGTGCCA-GAGGCTCGCAAGAGCAACTTCCGTCATCGTCCCATCGGTCTCGGTGTCAAT 39272 Query 20120 GGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAG 20179 || || ||||| | |||| || || || | | |||||| ||| |||| || || Sbjct 39271 GGTCTTGCCGATGCTTTCTTGGCTCTTCGCATGCCTTTCGACTCTCCTGAGGCCCGTCAG 39212 Query 20180 CTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTC 20239 ||||||| ||||||||| || | |||||||| || ||| | || ||||| ||| Sbjct 39211 CTCAACATTCAGATCTTCGAGACCATCTACCACGCTGCTCTCACCGCTTCATGCGATCTC 39152 Query 20240 GCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTC 20299 || || || || |||||||| | | |||| || |||| ||| |||| || Sbjct 39151 GCTGCCAAGCTTGGACCATACGAGACATACGAGGGCTCTCCCGTCTCCAAGGGCGAGCTT 39092 Query 20300 CAGCCGGACATGTGGGGCGTCACTGAGAATGA------GTTTTGGAGCGCCCTCAAGGTT 20353 || ||||||||||| || ||| | ||| | ||| ||| ||||||| Sbjct 39091 CAATACGACATGTGGGGTGTGACTCCTACTGATCTCTGGGACTGGGCCGCACTCAAGGCC 39032 Query 20354 GAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCG 20413 ||||| || || | ||||||||| | |||||||| |||||||| || || || Sbjct 39031 AAGATCGCCGAGCATGGTGTCCGCAACTCGCTTCTCGTCGCTCCCATGCCAACTGCTTCC 38972 Query 20414 ACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTACTTG 20473 ||| | ||||||||||| ||||||| |||||||| ||||| | ||||||||||| Sbjct 38971 ACCTCGCAGATCATGGGCTTCAACGAGTGCTTCGAGCCATACACCAGCAACATCTACTCC 38912 Query 20474 CGTCGTACACTGGCCGGTGAGTTCGTCATGGTAAACAAGCACCTGGTCCGCGACTTGCAG 20533 |||||| || || ||||||||| | || ||| || || |||||| Sbjct 38911 CGTCGTGTGCTCGCTGGTGAGTTCCAAGTTGTCAACCCATGGTTGCTCAAGGACTTGGTT 38852 Query 20534 AAGATCGATATGTGGTCGCCCAAAATTAAGAATGAAATTGTCCGAGCCGGCGGGAGCGTC 20593 || | ||||||| ||| || ||||| || || | || || | || Sbjct 38851 GAGCGTGGCCTGTGGTCAGACAACATGAAGAACCGCATCATCGCCGATGGTGGTTCCATC 38792 Query 20594 CAG-GCATT--GGATATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATC 20650 ||| | ||| | || ||| | ||||||||| | || | |||||| ||||| ||| Sbjct 38791 CAGCGAATTCCCAACATTCCCGACGACCTCAAGGCTCTGTATAAGACCGTCTGGGAGATC 38732 Query 20651 CCACAGAAGAGCATCATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAG 20710 ||| |||| || | ||| | || || || || || | |||||| ||||| ||| Sbjct 38731 AGCCAGCGCCACATCGTCCAAATGTCCGCTGACCGTGGTGCTTTCATCGATCAGTCTCAG 38672 Query 20711 TCGCTCAATGTCTTCATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTAC 20770 || || || |||| || | || | | ||| ||| | | | |||||| | | Sbjct 38671 AGCCTGAACATCCACATGAAGGAGCCCACCATGGGCAAGATCACCAGCATGCACTTCGCC 38612 Query 20771 GGCTGGCACAAGGGGCTCAAGACGGGCATGTACTATCTGCGGACC 20815 |||||| | || || ||||| ||||||||||| || || ||| Sbjct 38611 GGCTGGAAGCTCGGCCTGAAGACTGGCATGTACTACCTTCGCACC 38567 >seq3272 Length=75414 Score = 132 bits (146), Expect = 5e-26 Identities = 348/516 (67%), Gaps = 24/516 (5%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || || ||| | | ||||||||| || ||| || ||||| | || ||| |||||| | Sbjct 17001 TCCTTTTGGACTGCCGAGGAGATCGATCTCTCCAAGGACCTTCACGACTGGAACAAGCGC 16942 Query 59673 ---AATTACGACGAGCAGCAT-TTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGA 59728 || ||||||||| || | |||||| ||||||||||||||||| || || Sbjct 16941 CTGAACGACGACGAGC-GCTTCTTCATCTCCCACGTCCTGGCCTTCTTCGCTGCTTCGGA 16883 Query 59729 TGGAATTGTGATGGAAAATATAGACAT-GAACTTTTCCAAGGAT--GTCCAGATTGCCGA 59785 ||| || || | || || | ||| || | ||| ||| || || || |||| Sbjct 16882 TGGCATCGTCAACGAGAACCT---CATCGAGCGCTTCAGCGGAGAAGTGCAAATCCCCGA 16826 Query 59786 GGCCCGGTCGTTCTACGCGTATCAGTCGTTCAACGAGTCTATCCACTCCGAGACGTACTC 59845 |||||| | ||||||| | ||| | | ||| |||||||||||||| ||||| Sbjct 16825 GGCCCGCTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACATACTC 16766 Query 59846 GCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGT--CTGTTCCGTGCC 59903 ||| | ||||| | | ||| || || ||| || || || || ||| ||| Sbjct 16765 CCTCCTCATCGACACATACATCAGCGAGCCC-AAGC-AACGCACGTACCTCTTCAACGCC 16708 Query 59904 ATAGAGA-CGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCC 59962 || || | | |||| ||| | | || || || ||||| ||| ||||| ||| Sbjct 16707 ATCGACAACATCCCATGCATCCGTA-AGAAGGCTGACTGGGCGCTGCGATGGATC--TCC 16651 Query 59963 TG---GAGCATCA--TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTC 60017 || | || ||||| |||||||| || ||||| | | ||||| |||||| Sbjct 16650 GACAAGAACTCCACCTTTGCCTGCCGTCTCATCGCCTTTGCCGCCATCGAAGGCATCTTC 16591 Query 60018 TTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTG 60077 ||||| || || ||| | || |||||| | || |||||||| |||||||| ||||| Sbjct 16590 TTCTCCGGATCTTTCGCGTCGATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCTGGCCTC 16531 Query 60078 AGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGC 60113 | ||||||||||||||| |||||||| || |||||| Sbjct 16530 ACTTTCTCCAACGAGCTCATTTCCCGTGATGAGGGC 16495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548501624827200