Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2546 159 4e-34 seq2566 116 4e-21 seq3272 109 6e-19 >seq2546 Length=134672 Score = 159 bits (176), Expect = 4e-34 Identities = 497/753 (66%), Gaps = 16/753 (2%) Strand=Plus/Minus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252 ||||||| || || |||| |||||||| || ||| | || | |||||| ||| Sbjct 40281 TCATGCGTGTGGCTGTGGGAATCCACGGCGAGGACATTGAGTCTGCCATTGAGACCTACA 40222 Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312 ||| ||| | |||||||| || || || |||| || ||||||| ||||| || Sbjct 40221 ACTACATGTCGAACAAGTACTTCACACATGCGTCGCCCACGCTGTTCAGTGCTGGAACAC 40162 Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372 || ||||| || | ||||||||| | | |||||||||||| || || || | Sbjct 40161 CCAACGCTCAGCTGGCATCCTGCTTCCTCATCGACATGAAGGATGACAGTATTGATGGGA 40102 Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCC 53432 ||||||| || || ||| || ||| ||||| ||| | || || || || || Sbjct 40101 TCTACGACACACTGAAGACCTGCGCCATGATCTCTAAGAACGCCGGAGGCATTGGGCTCA 40042 Query 53433 AC-TGCTC-GAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGA 53490 || | | | ||| | || || | ||| || |||| || || ||||| || | Sbjct 40041 ACGTCCACAGAA--TTCGCGCAACCGGAGCATACATCAGCGGCACCAACGGAACATCCAA 39984 Query 53491 TGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 || |||| || ||||| || || || |||||||| || || |||||| ||||||| || Sbjct 39983 CGGTCTCGTACCCATGCTGCGTGTGTTTAACAACACCGCTCGCTACGTCGACCAGGGCGG 39924 Query 53551 TGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGA 53610 ||||| || | || ||||| ||| ||||||| |||||||| || | | Sbjct 39923 CAATAAGCGACCTGGCGCCTTTGCCATGTACATCGAGCCATGGCACGCAGATGTCTTCTC 39864 Query 53611 GTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGC-CGTGACCTGTT-T 53668 || | || || || ||| || || | || ||| | || ||| || || ||||| | Sbjct 39863 CTTCTTGGATCTCCGCAAGAACCACGGAAAGGAGGAGGTTCG-TGCTCGCGATCTGTTCT 39805 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAG--AAGGACGAGGAGTGGT 53726 || | ||||||| | || || ||||||||| | || ||| || || | ||| Sbjct 39804 AC-GGTCTGTGGGTCCCAGATCTCTTCATGAAGCGTGTTGAGCAAAATACCA--CCTGGA 39748 Query 53727 ACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACG 53786 |||||||||| ||||||||||||| || | ||||||||| | ||||| | | Sbjct 39747 CTTTGATGTGCCCTCACGAGTGCCCCGGTCTGGCTGATGTCTACGGCGCTGAGTTCGAGG 39688 Query 53787 AGATGTATCGGACG-TACGCAGTTCAGGGC-CGCTACAAGAAGAAGGTCAAGGCGCGTGA 53844 || |||| || || |||| | ||||| | | | ||| ||| || | | Sbjct 39687 AGCTGTA-CGAGCGATACGAGCGTGAGGGCAAGGGTCGTG-AGACCGTCCGCGCTCAGAA 39630 Query 53845 GGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAA 53904 | | ||| |||| |||||| || || ||||| || ||||| || || ||||| Sbjct 39629 GCTCTGGTATGCCATCCTCGAGGCTCAAACCGAGACCGGCACGCCATATATCCTTTACAA 39570 Query 53905 GGATTCGGTCAACGAGAAGAGCAACCAGAAGAA 53937 ||| | | ||||| ||||||||||||||||| Sbjct 39569 GGACGCTGCCAACGGCAAGAGCAACCAGAAGAA 39537 Score = 89.7 bits (98), Expect = 6e-13 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 |||||||| || ||||| || || |||||||| || || || | |||||||||||| | Sbjct 39010 CGCAACTCGCTTCTCGTCGCTCCCATGCCAACTGCTTCCACCTCGCAGATCATGGGCTTC 38951 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAG 55603 |||||| |||||||| ||||| | |||||||||| || || || || |||||| Sbjct 38950 AACGAGTGCTTCGAGCCATACACCAGCAACATCTACTCCCGTCGTGTGCTCGCTGGTGAG 38891 Query 55604 TT 55605 || Sbjct 38890 TT 38889 >seq2566 Length=144022 Score = 116 bits (128), Expect = 4e-21 Identities = 295/449 (66%), Gaps = 0/449 (0%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || || || ||||||| || ||||| || || || ||| ||| | | Sbjct 121008 CCCGTACCAATACCATCAGCGCCGTTGATGAGGATCATGGGAACGATCGGGATGTACATC 121067 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 || ||||| | | | |||||||| | ||| |||| | | | ||| | | || Sbjct 121068 TCTGGCTCGATCGTCTTTCCGTCATCAGTATTGTAGGTCAACAACGCCTCGTCGGTCTGA 121127 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | ||| | || | | | ||| || | |||| ||||||| || | |||||| || Sbjct 121128 TGGAAGAGCCTCCTGGCGAAGGGAGACAGTCTCGTGTAGATGTAACGTGCGCTGGCAGCG 121187 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || | ||||| || || | || || | || ||| ||||| | |||| |||| Sbjct 121188 TCACTTCCACCCTGCAATCGAGAACCGAAATTGCCGCTGGGTTCGAGAATATTGATGTTG 121247 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || | ||||| ||| ||||||||| | ||| || || |||||| || ||| ||| Sbjct 121248 TTTGAACCCACAAAAGTCTGAGCCAGACCCACGATAGTCTGCTGCAGTGACGTTTCTCCG 121307 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 | || || ||| || | | || | || || | || | ||||||| | ||| || Sbjct 121308 TACGAGTATGCTGTCAGCCCTGAGACCGAGCCGGCAAGCTCCACCACCTTGACGTCTTTC 121367 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 |||||||| | || ||| | ||| |||||||||||||| ||| || | ||| || Sbjct 121368 TTCAGGTTCCGCCGGAAACAAGTGTACATCACCTTGCGCTGACCTGGCTTGAGACCATCA 121427 Query 152296 ACCACGTGAGGAATCGAACGCTTGATGTC 152324 || || ||||| || ||| || |||| Sbjct 121428 ACGACAGAGGGAATGGACCGCATGTTGTC 121456 >seq3272 Length=75414 Score = 109 bits (120), Expect = 6e-19 Identities = 531/828 (64%), Gaps = 44/828 (5%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| ||||| || || ||||| ||||| ||| | | |||||||||||||| Sbjct 16190 TAGTCACCGACACGCTTCTCGAAGAAGTTCGTCTTGCCTCCGAGAGAGATGTTCTCCATG 16249 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATAGGCTTCTCC---CCAAACTGTGCCATGAGG 74579 | ||||| ||||| | || ||| |||||| || | |||||| |||| Sbjct 16250 AAATCGAAGGGGTTGGTGGCGTTGTAGT---GCTTCTGGTTGCCGA---GTGCCAGGAGG 16303 Query 74580 ---CGATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGT 74636 ||||| || || || | ||||| || ||| || | ||| |||| ||| Sbjct 16304 AGACGATCGGCGACGAACTCGATGTATTGGCACATGAGCTTGGCGTTCATTCCGAGGAGC 16363 Query 74637 TTGCACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTGGACAATC 74696 || || || || || |||| ||||| ||| | || |||| || || Sbjct 16364 GCACATGGGAGGGCGTCTGTGAGGAACTCCTGCTCGATGACGACAGCCTCGGTGATGATG 16423 Query 74697 TTGTGAATGTCTTTG---GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGC-GTCACGGC 74752 | | || ||| | || || ||| | | || |||||| | ||| | || ||| Sbjct 16424 TCTTCAACCACTTGGTTTGATGG---CTTGTTGTTGAGATGAGAGAACAGCAGGCA-GGC 16479 Query 74753 AAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGG 74812 ||| || ||| ||| ||||| | | || | || || || || | |||||||| Sbjct 16480 AAAGTCGGTGTGCATGCCCTCATCACGGGAAATGAGCTCGTTGGAGAAAGTGAGGCCAGG 16539 Query 74813 CATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCC 74872 ||| || ||||||||||||||||| ||||| | ||| || || |||||||||||| Sbjct 16540 CATGAGACCACGCTTCTTCAACCAGAAGATCGACGCGAAAGATCCGGAGAAGAAGATGCC 16599 Query 74873 TTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCA-------TCGGAAGTCA 74925 ||||| |||||||||| || || || || |||| | ||||| | Sbjct 16600 TTCGATGGCGGCAAAGGCGATGAGACGGCAGGC-AAAGGTGGAGTTCTTGTCGGA---GA 16655 Query 74926 TCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGCTTGG 74984 |||| | | ||||| ||||| ||| | | ||| |||| | ||||| || | | Sbjct 16656 TCCATCGCAGCGCCCAGTCAGC-CTTCTTACGGATGCATGGGATGTTGTCGATGGCGTTG 16714 Query 74985 AAGAGG--CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 |||||| | ||| || ||| ||| || ||| | |||| || | || ||||| | Sbjct 16715 AAGAGGTACGTGCGTT-GCTT-GGGCTCGCTGATGTATGTGTCGATGAGGAGGGAGTATG 16772 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTGCAA 75102 |||| || || || ||| | | |||| | ||||||| | || ||||| | | Sbjct 16773 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCAGCGGGCCTCGGGGA 16832 Query 75103 TCTGTAC--ATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | || || ||| |||| || | || ||||| |||||||||| ||||| || Sbjct 16833 TTTGCACTTCTCCGCTGAAGCGCTC--GATGAGGTTCTCGTTGACGATGCCATCCGAAGC 16890 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGT---GAGTTTGTC 75217 ||||| || ||||| || ||| ||| |||||| ||||| | | | |||| Sbjct 16891 AGCGAAGAAGGCCAGGACGTGGGAGATGAAGAAGCGCTCGTCGTCGTTCAGGCGCTTGTT 16950 Query 75218 CCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAA 75265 ||| || | |||||| | | ||| ||||||||| | ||||| || Sbjct 16951 CCAGTCGTGAAGGTCCTTGGAGAGATCGATCTCCTCGGCAGTCCAAAA 16998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547192880124000