Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2546 168 8e-37 seq2317 152 6e-32 seq2566 120 3e-22 seq864 109 6e-19 >seq2546 Length=134672 Score = 168 bits (186), Expect = 8e-37 Identities = 778/1218 (64%), Gaps = 21/1218 (2%) Strand=Plus/Plus Query 80538 ACCCCACATGTCGTGCTGCAAGAT-GCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGT 80596 |||||||||||||| || ||| | ||||| || | ||||| ||| || | ||||||| Sbjct 39074 ACCCCACATGTCGTATTG-AAGCTCGCCCTTGGAGACGGGAGAGCCCTCGTATGTCTCGT 39132 Query 80597 ACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACT 80656 | || || | | || || || || || | | || || ||||| || ||| || Sbjct 39133 ATGGTCCAAGCTTGGCAGCGAGATCGCATGAAGCGGTGAGAGCAGCGTGGTAGATGGTCT 39192 Query 80657 CAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCA 80716 | |||| |||| | || |||| || |||||| | || || | || Sbjct 39193 CGAAGATCTGAATGTTGAGCTGACGGGCCTCAGGAGAGTCGAAAGGCATGCGAAGAGCCA 39252 Query 80717 TGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATC 80776 ||| | || || || || | || |||| |||| || || || || ||| | || Sbjct 39253 AGAAAGCATCGGCAAGACCATTGACACCGAGACCGATGGGACGATGACGGAAGTT-GCTC 39311 Query 80777 GCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 || ||||| || | |||||| ||| ||||||| ||||| ||| || Sbjct 39312 TTGCGAGCCTCTGGCACTGGGTAGTGGTTGACCTCGATGATCTTGTTCAAGTTCTTGGTG 39371 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTG---GTTCCCCTTC---ACA 80889 || | |||| || | ||||| || | ||||||||| | |||| | | ||| Sbjct 39372 ACGGTCTGTGTGACCTGGTGAAGCTTTTCAAAGTCGAAGCGCTCGTTCTCGATGTCGACA 39431 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAAC 80949 | | ||||| || || || || ||||||||||| ||||| |||| | | || || Sbjct 39432 TAGGTGGGAAGAGCGAGAGATGCAAGGTTGCACACGGCGACCTCATCAGGAGCAGTGTAC 39491 Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 |||| ||| || ||||| | || || || || |||| || |||||||| | Sbjct 39492 TCGATGATCTCGGTGCAGAGGTTGGAGCTGCGGATGGTTCCCAAATTCTTCTGGTTGCTC 39551 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 ||| ||||| |||||||||||| || || || || ||||||||| || | || | Sbjct 39552 TTGCCGTTGGCAGCGTCCTTGTAAAGGATATATGGCGTGCCGGTCTCGGTTTGAGCCTCG 39611 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 |||||||| | ||| | || | || ||| || || ||||| || | | Sbjct 39612 AGGATGGCATACCAGAGCTTCTGAGCGCGGACGGTCTCACGACCCTTGCCCTCACGCTCG 39671 Query 81130 TACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 || |||| |||| | ||||||| || |||| | |||| || | |||||||| Sbjct 39672 TATCGCTCGTACAGCTCC-TCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTC 39730 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 || ||||||||||| |||| ||| | | ||| ||| ||||||||| || || Sbjct 39731 GTGAGGGCACATCAAAGTCCAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGG 39790 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCG-GCAGCGCGCCTCCTCATCACCCTGGTTGAGGC 81307 || ||| || || |||||| ||||| ||| || ||||||| | || ||||| || Sbjct 39791 GACCCACAGACCGTAGAACAGATCGCGAGCA-CGAACCTCCTCCTTTCCGTGGTTCTTGC 39849 Query 81308 GCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA--TCGA 81365 | | || | ||| | || || || ||||||||||| | |||| ||| | || Sbjct 39850 GGAGATCCAAGAAGGAGAAGACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGC 39909 Query 81366 CCCCTTGC-GACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACA 81424 | | || | ||| ||||||| |||||| || || || |||||| ||||||| || Sbjct 39910 CAGGTCGCTTATTGCCGCCCTGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCA 39969 Query 81425 TAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA 81484 | || | || ||| | || ||||| || || ||| | || | ||||| | Sbjct 39970 TGGGTACGAGACCGTTGGATGTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAA 40029 Query 81485 CCTTGCTGA--TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTT 81542 || || ||| || || ||||| || | ||| || ||| || || || Sbjct 40030 TTCTGTGGACGTTG--AGCCCAATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTT 40087 Query 81543 CATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGA 81602 || || || || || || || || || || | |||||||| | | ||| ||| || Sbjct 40088 CAGTGTGTCGTAGATCCCATCAATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGC 40147 Query 81603 CATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACG 81662 || ||||| | | || || ||| ||||||| || || | ||| || |||| || Sbjct 40148 CAGCTGAGCGTTGGGTGTTCCAGCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTT 40207 Query 81663 GTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGAT 81722 ||| ||||| || ||||| || || | ||| || || ||||| || || | Sbjct 40208 GTTCGACATGTAGTTGTAGGTCTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCAC 40267 Query 81723 AGCTACACGCATAAACAT 81740 ||| |||||||| | ||| Sbjct 40268 AGCCACACGCATGATCAT 40285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || || || ||||||||||| ||||| ||||| |||||||||| | |||||| Sbjct 38568 GTGCGAAGGTAGTACATGCCAGTCTTCAGGCCGAGCTTCCAGCCGGCGAAGTGCATGCTG 38627 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||| ||| | | ||||| | || |||| ||||||||| |||||||||| |||| Sbjct 38628 GTGATCTTGCCCATGGTGGGCTCCTTCATGTGGATGTTCAGGCTCTGAGACTGATCGATG 38687 Query 80158 AAAGCCCCACGATCTGCCGCCATTT 80182 ||||| ||||| || || | ||||| Sbjct 38688 AAAGCACCACGGTCAGCGGACATTT 38712 >seq2317 Length=245020 Score = 152 bits (168), Expect = 6e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || | ||||| ||||| Sbjct 71656 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCGTCG 71597 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||| | || || |||||||||||||| ||||| |||||||| Sbjct 71596 GACACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAA 71537 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | || || || || |||||||| ||||| | || || || | ||||| || Sbjct 71536 CAGCGATTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGCACGCTCTCCGACTACAAC 71477 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| ||||| |||||||| ||| | || ||||| ||||| Sbjct 71476 ATTCAGAAGGAGTCCACGCTTCATCTCGTCCTCCGCCTTCGTGGTGG 71430 Score = 149 bits (164), Expect = 7e-31 Identities = 157/204 (77%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489 || || ||||| || || |||||||||||||| |||| ||| | ||| ||||| Sbjct 71860 ACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCGGATACCATCGACAATGTGAAGAGC 71801 Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 || || |||||||||||||| |||||||||||||||||||| || || || || || ||| Sbjct 71800 AAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAG 71741 Query 27550 CAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||||| ||||||| || ||||| ||| ||||| || |||| ||||| |||||||| || Sbjct 71740 CAACTTGAGGATGGGCGCACCCTCAGC-GACTACAACATCCAGAAGGAGTCCACTCTCCA 71682 Query 27609 TCTAGTCTTGCGTCTTCGCGGTGG 27632 | || | || || || ||||| Sbjct 71681 CTTGGTGCTCCGCCTCCGTGGTGG 71658 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || |||||||||||||| || || || || |||||| Sbjct 71428 ATGCAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGTCATCA 71369 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||| | || || || ||||||||||| || || || ||||| Sbjct 71368 GACACAATCGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAA 71309 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || || || ||||| || ||||| | || || || | ||||| || Sbjct 71308 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTTTCTGACTACAAC 71249 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| ||| || || | || | ||||| || || ||||| Sbjct 71248 ATTCAGAAGGAGAGCACCCTGCACTTGGTGCTCCGTCTGCGTGGAGGACA 71199 >seq2566 Length=144022 Score = 120 bits (132), Expect = 3e-22 Identities = 299/449 (67%), Gaps = 10/449 (2%) Strand=Plus/Minus Query 31959 CAAGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATA 32018 || |||||||||||| || | || || |||||||| |||||||||||||| || Sbjct 121451 CATGCGGTCCATTCCCTCTGTCGTTGATGGTCTCAAGCCAGGTCAGCGCAAGGTGATGTA 121392 Query 32019 CGCCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGT 32078 | | || || | ||||||| || ||| | ||||||| | |||| | |||| || Sbjct 121391 CACTTGTTTCCGGCGGAACCTGAAGAAAGACGTCAAGGTGGTGGAGCTTGCCGGCTCGGT 121332 Query 32079 GGCAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCT 32138 ||| || || || || |||| || |||| || ||| || || || || Sbjct 121331 CTCAGGGCTGACAGCATACTCGTACGGAGAAACGTCACTGCAGCAGACTATCGTGGGTCT 121272 Query 32139 TGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGG 32198 ||||||| ||||| ||| |||| ||| | || | ||||| || || || ||| | Sbjct 121271 GGCTCAGACTTTTGTGGGTTCAAACAACATCAATATTCTCGAACCCAGCGG-CAATTTCG 121213 Query 32199 GACCCGGCTCGC-CGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC----CCGT 32253 | | | | || ||||| | || ||||| ||| | |||||||||| ||| | || Sbjct 121212 GTTCTCGATTGCAGGGTGGAAGTGACGCTGCCAGCGCACGTTACATCTACACGAGACTGT 121153 Query 32254 CTCGCACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAAT 32313 ||| |||||| | | | | | ||| | | | | ||||| ||| || | | |||||| Sbjct 121152 CTC---CCTTCG-CCAGGAGGCTCTTCCATCAGACCGACGAGGCGTTGTTGACCTACAAT 121097 Query 32314 TTTGATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTG 32373 ||||||||| || | ||||||| | | | |||| ||| | |||| |||||| | Sbjct 121096 ACTGATGACGGAAAGACGATCGAGCCAGAGATGTACATCCCGATCGTTCCCATGATCCTC 121037 Query 32374 GTGAACGGTGCAGAAGGCATCGGAACGGG 32402 | ||||| || || || || || ||||| Sbjct 121036 ATCAACGGCGCTGATGGTATTGGTACGGG 121008 >seq864 Length=88037 Score = 109 bits (120), Expect = 6e-19 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 || || ||||| || || ||||||||||| || || ||||| ||||| || | ||| Sbjct 47666 TTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCATC 47607 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | || | ||| || |||||||| ||||||||||| || || ||||| ||||| | Sbjct 47606 GACAACGTCAAGAGCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATTG 47547 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAAA 27593 || || || || |||||||||||||||| || || || ||| ||||| || |||| || Sbjct 47546 ATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTCTCAGC-GACTACAACATCCAGAA 47488 Query 27594 GG 27595 || Sbjct 47487 GG 47486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570286304385600