Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq2317 131 1e-25
seq2215 87.8 1e-12
>seq2317
Length=245020
Score = 131 bits (144), Expect = 1e-25
Identities = 162/219 (74%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||| || || ||||||||||| |||||||| || || ||||| |||||
Sbjct 71211 AGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGCGTTCGG 71270
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| ||||| || || ||||| || || | |||||||||||||| || | ||||||
Sbjct 71271 CCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATACCCTCC 71330
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | ||||||||| ||||||||| | ||
Sbjct 71331 TTGTCTTGGATC-TTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTCGAGTGT 71389
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || ||||| | || || || || || |||||
Sbjct 71390 GATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428
Score = 98.7 bits (108), Expect = 6e-16
Identities = 160/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| || | || | ||| || ||| |||||| |||||||| || || ||
Sbjct 71430 CCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAG 71489
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| |||||||| || ||||| || || || ||||||||||| || ||
Sbjct 71490 AGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGA 71549
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| ||||||||||| |||| || | || || | || ||||| ||||||
Sbjct 71550 ATGCCCTCCTTGTCCTGGATC-TTCGACTTGACATTGTCGATGGTGTCCGACGACTCCAC 71608
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| ||||| || || || | || || || || ||||||||
Sbjct 71609 CTCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656
Score = 84.2 bits (92), Expect = 1e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| ||||||||| |||||| || ||||| || || || || |||
Sbjct 71667 AGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGC 71726
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || |||||||| || ||||| || || | ||||| ||||| || || | ||||||
Sbjct 71727 CCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCC 71786
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 71787 TTGTCCTGGATCTT 71800
>seq2215
Length=151005
Score = 87.8 bits (96), Expect = 1e-12
Identities = 96/128 (75%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| ||||| || |||||| || ||||| || || || || |||||
Sbjct 66711 AGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGG 66770
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || | |||||||||||||| || | || |||
Sbjct 66771 CCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCC 66830
Query 34609 TTGTCTGT 34616
||||||||
Sbjct 66831 TTGTCTGT 66838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314716635107540
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |