Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq2317 154 3e-32 seq864 120 7e-22 seq2215 98.7 2e-15 >seq2317 Length=245020 Score = 154 bits (170), Expect = 3e-32 Identities = 147/188 (78%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| ||||||||||| || |||||||| || || ||||| | ||||| Sbjct 71673 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 71732 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || |||||||| |||||||| ||||| || ||||| ||||||| || ||||||||| Sbjct 71733 TCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 71792 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||||| || |||||||| || ||| |||||||| || ||||| ||| Sbjct 71793 TGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTC 71852 Query 211083 TTTCCCGT 211090 ||||| || Sbjct 71853 TTTCCAGT 71860 Score = 152 bits (168), Expect = 1e-31 Identities = 167/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| || ||||| |||||||| || || ||||| || || | || || Sbjct 71435 ACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGT 71494 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | || || || || |||||||| |||||||| | || |||||||| || |||| || Sbjct 71495 GCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCC 71554 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||||||||| || || || ||||||||||| || || ||||| | Sbjct 71555 CTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACCTCCAA 71614 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||||||||| || ||||| ||||| || || | |||||| Sbjct 71615 GGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 Score = 140 bits (154), Expect = 8e-28 Identities = 166/225 (74%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | || || | ||| || ||| ||| || || ||||| || || | ||| Sbjct 71204 TCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAG 71263 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || | || || || ||||||||||| |||||||| ||||| |||||||| || || | Sbjct 71264 CGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGAT 71323 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || |||||||| |||||||| |||||||| ||||| ||||| || || || || Sbjct 71324 ACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTC 71383 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || ||||| ||||| || || | ||||| Sbjct 71384 GAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 >seq864 Length=88037 Score = 120 bits (132), Expect = 7e-22 Identities = 134/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 || |||||||| || || || || | ||||| || || ||||| || |||||||| Sbjct 47488 TTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 47547 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | || |||||||| || || | ||| ||||| ||||| ||||| || ||||| ||| Sbjct 47548 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTGTCG 47607 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 |||||||| || || |||||||| ||||| ||||| |||||||| ||||| || || Sbjct 47608 ATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 47666 >seq2215 Length=151005 Score = 98.7 bits (108), Expect = 2e-15 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || || ||||| || |||||||| || || | ||||| | || || Sbjct 66717 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 66776 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| ||||| |||||||| || |||| ||||||||||| Sbjct 66777 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTC 66835 Score = 84.2 bits (92), Expect = 5e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||||| || || || ||||||||||| || ||| |||||||| ||||||| Sbjct 66907 CCTGGATCTTGGACTTGACATTGTCGATGGTGTCGGACGATTCCACCTCGAGGGTGATCG 66966 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| |||||||| ||||| || || | |||||| Sbjct 66967 TCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT 67000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159101801473700