Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq2317 134 3e-26 seq864 102 2e-16 seq2215 91.5 4e-13 >seq2317 Length=245020 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 |||||| | ||||| || || || ||||| || || || | ||||| |||| | || Sbjct 71435 ACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGT 71494 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | || || || || ||||| || |||||||| | ||| |||||||| || ||||| || Sbjct 71495 GCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCC 71554 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 |||||||| |||||||| ||| ||| ||||||||||| || | ||||| || || Sbjct 71555 CTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCACCTCCAA 71614 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | || || | ||| | ||||| Sbjct 71615 GGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 Score = 127 bits (140), Expect = 5e-24 Identities = 142/190 (75%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||||||||| || || |||| ||||| ||| | || | |||||| Sbjct 71673 AGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCC 71732 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| || |||||||| || || || ||||| || ||||| || |||||||| Sbjct 71733 TCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCC 71792 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| |||||||| || |||| || || || | ||||| ||| Sbjct 71793 TGGATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTC 71852 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 71853 TTTCCAGTCA 71862 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||| || || || | ||||| || | | |||| || || Sbjct 71217 AGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAAAGCGTTCGGCCGTCC 71276 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || |||||||| || || ||||| ||||||||| Sbjct 71277 TCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGGATACCCTCCTTGTCT 71336 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||| ||||| |||||||| | ||||| || | ||||| ||| Sbjct 71337 TGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACTTCGAGTGTGATAGTC 71396 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | |||||| Sbjct 71397 TTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 >seq864 Length=88037 Score = 102 bits (112), Expect = 2e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| ||| | ||||| ||||| || || ||||| || |||||||| Sbjct 47488 TTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 47547 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | ||| |||||||| || || || || ||||| || || ||||| ||| || ||| Sbjct 47548 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTTGACGTTGTCG 47607 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| || | ||||| || | ||||| ||||||||||| Sbjct 47608 ATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 47651 >seq2215 Length=151005 Score = 91.5 bits (100), Expect = 4e-13 Identities = 97/127 (76%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| || || || || |||| ||||| |||| | |||| || || Sbjct 66717 AGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCC 66776 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC- 225620 || |||||||| || |||||||| || || |||||||| || ||||| ||||||||||| Sbjct 66777 TCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGAATGCCTTCCTTGTCT 66836 Query 225621 -TTGGAT 225626 |||||| Sbjct 66837 GTTGGAT 66843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192479555945720