Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2546 176 6e-39 seq3272 86.0 9e-12 >seq2546 Length=134672 Score = 176 bits (194), Expect = 6e-39 Identities = 452/685 (66%), Gaps = 4/685 (1%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || || ||| | || | |||||| ||| || ||||| || | ||||||||||| | | Sbjct 39690 TCGAACTCAGCGCCGTAGACATCAGCCAGACCGGGGCACTCGTGAGGGCACATCAAAGTC 39749 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 ||| || || || ||| || ||||| |||||||| || | ||| ||| | || Sbjct 39750 CAGGTGGTATTTTGCTCAACACGCTTCATGAAGAGATCTGGGACCCACAGACCGTAGAAC 39809 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATA 78104 ||||| || | | | || || ||||| ||||| ||||| | || | Sbjct 39810 AGATCGCGAGCACGAACCTCCTCCTTTCCGTGGTTCTTGCGGAGATCCAAGAAGGAGAAG 39869 Query 78105 ATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCCC 78164 | ||| | |||||||| || | || || || | | |||||||| ||||| || ||| Sbjct 39870 ACATCTGCGTGCCATGGCTCGATGTACATGGCAAAGGCGCCAGGTCGCTTATTGCCGCCC 39929 Query 78165 TGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGAT 78224 || || | || | |||||||| ||| | || | || ||| || | | |||||| ||| Sbjct 39930 TGGTCGACGTAGCGAGCGGTGTTGTTAAACACACGCAGCATGGGTACGAGACCGTTGGAT 39989 Query 78225 GTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATCCCT 78284 ||||| || || || || || ||| |||||||||| | | | | ||| Sbjct 39990 GTTCCGTTGGTGCCGCTGATGTATGCTCCGGTTGCGCGAATTCTGTGGACGTTGAGCCCA 40049 Query 78285 ATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATACCCTCT 78344 || ||||| || ||||||| || | ||||| |||| ||| |||||||| || || Sbjct 40050 ATGCCTCCGGCGTTCTTAGAGATCATGGCGCAGGTCTTCAGTGTGTCGTAGATCCCATCA 40109 Query 78345 ATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCT 78404 |||||||||||| |||||| | || || ||| | || ||| | ||||| Sbjct 40110 ATACTGTCATCCTTCATGTCGATGAGGAAGCAGGATGCCAGCTGAGCGTTGGGTGTTCCA 40169 Query 78405 GCATTAAATAATGTCGGAGATGCATGCGTAAACCA-TTTTTCAGAAAGTAGATTGTATGT 78463 ||| | || | || || || ||||| || || | || ||| | |||| ||||| || Sbjct 40170 GCACTGAACAGCGTGGGCGACGCATGTGTGAAGTACTTGTTCGACATGTAG-TTGTAGGT 40228 Query 78464 TTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACATATG 78523 ||||| || || || |||||| || ||||| || || |||||||| | ||| || Sbjct 40229 CTCAATGGCAGACTCAATGTCCTCGCCGTGGATTCCCACAGCCACACGCATGATCATCTG 40288 Query 78524 CTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTT 78583 || |||||||| | ||| ||| || |||| | |||||| | |||| || || Sbjct 40289 TTGTGGTCTTTCGGCAACCTTGCCATTGATCCTCAAAAGGTATGACCTCTCCAGCGTCTT 40348 Query 78584 AAAACCAAAATAGTTGTA--TGAAA 78606 || || || || | ||| ||||| Sbjct 40349 GAACCCGAAGTATTGGTAGTTGAAA 40373 >seq3272 Length=75414 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| || || ||||| || ||||| || ||||| || || | ||| || || | |||| Sbjct 16517 TCGTTGGAGAAAGTGAGGCCAGGCATGAGACCACGCTTCTTCAACCAGAAGATCGACGCG 16576 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 |||||||| || ||||| |||||||| | ||| ||||| ||| Sbjct 16577 AAAGATCCGGAGAAGAAGATGCCTTCGATGGCGGCAAAGGCG 16618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694639450243200