Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq2317 181 2e-40
seq864 132 1e-25
seq3272 120 6e-22
seq2215 87.8 4e-12
>seq2317
Length=245020
Score = 181 bits (200), Expect = 2e-40
Identities = 177/228 (78%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || || ||||| | |||| || || || ||||||||||| |
Sbjct 71429 ACCACCACGAAGGCGGAGGACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGA 71488
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||||||||||| ||||| ||||| || ||||| |||||||| || |||||||| ||
Sbjct 71489 GAGCGTGCGGCCGTCCTCAAGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGG 71548
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || || | ||||| |||||||| | || ||
Sbjct 71549 AATGCCCTCCTTGTCCTGGATCTTCGACTTGACATTGTCGATGGTGTCCGACGACTCCAC 71608
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||||||||| || || | ||||| ||||| ||||||||
Sbjct 71609 CTCCAAGGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656
Score = 176 bits (194), Expect = 9e-39
Identities = 175/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|| |||||||| || || |||| || | ||||| || || || ||||||||||||| |
Sbjct 71202 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGAA 71261
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
||||| ||||| ||||| || || || ||||| ||||| | || |||||||| ||
Sbjct 71262 AGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGGG 71321
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
||||||||||||||||||||||| | || ||| | ||||| ||||| || | || |||
Sbjct 71322 ATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCACT 71381
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
||||| ||||| ||||| || || | ||||| ||||| || |||||
Sbjct 71382 TCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428
Score = 132 bits (146), Expect = 1e-25
Identities = 155/207 (75%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| ||||| || |||| || | ||| || || ||||||||||||||
Sbjct 71657 ACCACCACGGAGGCGGAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCT 71716
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| ||||| |||||||| ||||| || ||||| ||||| | || || ||||| ||
Sbjct 71717 GAGGGTGCGCCCATCCTCAAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGG 71776
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| ||||||||||| |||||| ||||| || || | ||||| || ||||| | || |
Sbjct 71777 AATGCCCTCCTTGTCCTGGATC-TTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAA 71835
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCA 283077
| || || ||||| ||||| || ||||
Sbjct 71836 CCTCAAGGGTGATGGTCTTTCCAGTCA 71862
>seq864
Length=88037
Score = 132 bits (146), Expect = 1e-25
Identities = 139/180 (77%), Gaps = 2/180 (1%)
Strand=Plus/Plus
Query 282912 TTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATC 282971
|| |||||||||||||| || || ||||||||||| ||||| || ||||| ||||||
Sbjct 47488 TTCTGGATGTTGTAGTCGCTGAGAGTTCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATC 47547
Query 282972 AAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT-TTTACGGTATC 283030
|| || |||||||| || || |||||||| || || ||| ||||| || ||| | ||
Sbjct 47548 AATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATC-TTGCTCTTGACGTTGTC 47606
Query 283031 GATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAA 283090
||| ||||| || | || || ||||| ||||| ||||| ||||| | ||||| |||||
Sbjct 47607 GATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGTCTTCACGAA 47666
>seq3272
Length=75414
Score = 120 bits (132), Expect = 6e-22
Identities = 137/184 (74%), Gaps = 0/184 (0%)
Strand=Plus/Minus
Query 230227 TCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCG 230286
|||| ||||| || | |||||| | ||||| ||||| ||||| || |||||| | ||
Sbjct 16358 TCGGAATGAACGCCAAGCTCATGTGCCAATACATCGAGTTCGTCGCCGATCGTCTCCTCC 16299
Query 230287 TGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCA 230346
|||| || || || |||| || ||| ||| |||||||||| ||| |||||| ||
Sbjct 16298 TGGCACTCGGCAACCAGAAGCACTACAACGCCACCAACCCCTTCGATTTCATGGAGAACA 16239
Query 230347 TTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCG 230406
| || ||| || || || ||||||||||| ||||||||| | || || |||| | |||
Sbjct 16238 TCTCTCTCGGAGGCAAGACGAACTTCTTCGAGAAGCGTGTCGGTGACTACCAAAAGGCCG 16179
Query 230407 GTGT 230410
||||
Sbjct 16178 GTGT 16175
>seq2215
Length=151005
Score = 87.8 bits (96), Expect = 4e-12
Identities = 105/142 (74%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| || | || || || |||||||||||||| |
Sbjct 66702 CCACCACGGAGACGGAGAACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAG 66761
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| ||||| || || || ||||| ||||||| || |||||||| |||
Sbjct 66762 AGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGGCGCTGTTGGTCCGGTGGA 66821
Query 282993 ATACCCTCCTTGTC--TTGGAT 283012
|| || |||||||| ||||||
Sbjct 66822 ATGCCTTCCTTGTCTGTTGGAT 66843
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046693869650520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |