Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015- 04-30] 3,380 sequences; 36,798,086 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq2317 150 1e-31 seq864 111 1e-19 seq2215 89.7 4e-13 >seq2317 Length=245020 Score = 150 bits (166), Expect = 1e-31 Identities = 161/211 (76%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 || || ||||||||| |||||| || |||||||| |||| ||| ||| |||| || Sbjct 71448 ACGAGATGAAGCGTGGACTCCTTCTGAATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCA 71507 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 || ||||| ||||| |||||||| ||||| || |||| || | || ||||| ||| Sbjct 71508 AGTTGCTTGCCGGCGAAGATCAATCGCTGTTGGTCTGGGGGAATGCCCTCCTTGTCCTGG 71567 Query 44249 ATCTTCTGCTT--CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 |||||| ||| || ||| | |||||||| | || |||||||||| || ||||||| Sbjct 71568 ATCTTCGACTTGACATTGT--CGATGGTGTCCGACGACTCCACCTCCAAGGTGATCGTCT 71625 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || ||||||||||| |||||||| ||||| Sbjct 71626 TGCCAGTGAGGGTCTTGACGAAGATCTGCAT 71656 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 44110 TCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGC 44169 ||| || | ||| | | ||||| ||| || ||||||||||| || |||||||| || | Sbjct 71201 TCCTCCACGCAGACGGAGCACCAAGTGCAGGGTGCTCTCCTTCTGAATGTTGTAGTCAGA 71260 Query 44170 GAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGG 44229 || || |||| || |||||||| ||||| ||||| | ||||| || || | || Sbjct 71261 AAGCGTTCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGTTGGTCCGGTGG 71320 Query 44230 CACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCAC 44289 | ||| ||||| || |||||| ||||| | | || ||||| | || ||||| Sbjct 71321 GATACCCTCCTTGTCTTGGATCTTCGACTTCACGTTGTCGATTGTGTCTGATGACTCCAC 71380 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || | || || ||||| || ||||| ||||| |||||||||||||| Sbjct 71381 TTCGAGTGTGATAGTCTTGCCGGTGAGTGTCTTGACGAAGATTTGCAT 71428 Score = 102 bits (112), Expect = 6e-17 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||| || ||| |||||| ||||||||||| ||| ||| |||| | || || Sbjct 71675 CACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGGGTGCGCCCATCCTC 71734 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || ||||| ||||| ||||| | |||||||| |||| ||| | || ||||| ||| Sbjct 71735 AAGTTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCTGGAGGAATGCCCTCCTTGTCCTG 71794 Query 44248 TATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||||| | | ||||| || | ||| || ||||| | || || ||||| Sbjct 71795 GATCTTGCTCTTCACATTGTCGATGGTATCCGAGGACTCAACCTCAAGGGTGATGGTCTT 71854 Query 44308 TCCCGT 44313 ||| || Sbjct 71855 TCCAGT 71860 >seq864 Length=88037 Score = 111 bits (122), Expect = 1e-19 Identities = 139/189 (74%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 44142 TGCTCTCCTTTTGGATGTTGTAATCG--GCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCC 44199 ||| | |||| ||||||||||| ||| | ||||| || | || || || ||||| || Sbjct 47480 TGCGCACCTTCTGGATGTTGTAGTCGCTGAGAGTT--CGGCCATCCTCGAGTTGCTTTCC 47537 Query 44200 GGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTT 44259 ||| |||||||| ||||| || || | || | || ||||| ||| ||||| ||| Sbjct 47538 GGCGAAGATCAATCGCTGTTGGTCCGGTGGGATTCCCTCCTTATCCTGAATCTTGCTCTT 47597 Query 44260 CAATGTTCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGT 44319 | | | |||||||||| || |||||||| | || || ||||| ||||||||||| Sbjct 47598 GACGTTGTCGATGGTGTCGGACGACTCCACCTCGAGGGTGATAGTCTTGCCCGTGAGGGT 47657 Query 44320 CTTCACGAA 44328 ||||||||| Sbjct 47658 CTTCACGAA 47666 >seq2215 Length=151005 Score = 89.7 bits (98), Expect = 4e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 44270 ATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAG 44329 |||||||||| ||||||||||| | || |||||||| ||||||||||||||||||||| Sbjct 66933 ATGGTGTCGGACGATTCCACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTCTTCACGAAG 66992 Query 44330 ATTTGCATG 44338 || |||||| Sbjct 66993 ATCTGCATG 67001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359975570645460