Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Zymoseptoria_20pseudotritici_20[genbank_20GCA_5F000983605.1_202015-
04-30] 3,380 sequences; 36,798,086 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq864 158 3e-33
seq2317 123 6e-23
seq2215 84.2 5e-11
>seq864
Length=88037
Score = 158 bits (174), Expect = 3e-33
Identities = 143/180 (79%), Gaps = 0/180 (0%)
Strand=Plus/Minus
Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988
||||||||| || ||||| || || || ||||||||||||||||| || ||||||||
Sbjct 47667 TTTCGTGAAGACCCTCACGGGCAAGACTATCACCCTCGAGGTGGAGTCGTCCGACACCAT 47608
Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048
||| |||||||| ||||||||||| || || |||||||| |||||||| || ||| |
Sbjct 47607 CGACAACGTCAAGAGCAAGATTCAGGATAAGGAGGGAATCCCACCGGACCAACAGCGATT 47548
Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
|||||||||||||| || ||||| ||||| | ||||| ||| || ||| |||| ||
Sbjct 47547 GATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACTCTCAGCGACTACAACATCCAGAA 47488
>seq2317
Length=245020
Score = 123 bits (136), Expect = 6e-23
Identities = 140/188 (74%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| ||||| || || ||||| || || || ||||| ||||| ||||| ||||||
Sbjct 71425 CAAATCTTCGTCAAGACACTCACCGGCAAGACTATCACACTCGAAGTGGAGTCATCAGAC 71366
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| ||||| ||||| || ||||| || ||||| || || ||||| |||||||| ||
Sbjct 71365 ACAATCGACAACGTGAAGTCGAAGATCCAAGACAAGGAGGGTATCCCACCGGACCAACAG 71306
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||||||||| || ||||| || || || | || ||| | || || ||| |
Sbjct 71305 CGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGAACGCTTTCTGACTACAACATT 71246
Query 178104 CAAAAAGA 178111
|| || ||
Sbjct 71245 CAGAAGGA 71238
Score = 123 bits (136), Expect = 6e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || ||||| || || ||||||||| | |||||||| || |||
Sbjct 71653 CAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACCTTGGAGGTGGAGTCGTCGGAC 71594
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| || ||||| ||||| |||||||| || || || || || ||||| ||
Sbjct 71593 ACCATCGACAATGTCAAGTCGAAGATCCAGGACAAGGAGGGCATTCCCCCAGACCAACAG 71534
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||| | ||||||||||| || || || || || || | || || |||| || ||| |
Sbjct 71533 CGATTGATCTTCGCCGGCAAGCAACTTGAGGACGGCCGCACGCTCTCCGACTACAACATT 71474
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
|| || || || || || ||||| ||
Sbjct 71473 CAGAAGGAGTCCACGCTTCATCTCGT 71448
Score = 113 bits (124), Expect = 1e-19
Identities = 136/184 (74%), Gaps = 1/184 (1%)
Strand=Plus/Minus
Query 177945 ACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAGAACGTCAAACAA 178004
|| ||||| || |||||||| ||||| || ||| || |||||||| || || ||
Sbjct 71860 ACTGGAAAGACCATCACCCTTGAGGTTGAGTCCTCGGATACCATCGACAATGTGAAGAGC 71801
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
||||| |||||||| || || || ||||| |||||||| || || ||||||||||| ||
Sbjct 71800 AAGATCCAGGACAAGGAGGGCATTCCTCCAGACCAGCAGCGCCTCATCTTCGCCGGCAAG 71741
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| || || ||||| | || || ||| || ||| |||| || || || || || ||
Sbjct 71740 CAACTTGAGGATGGGCGCACCCTCAGCGACTACAACATCCAGAAGGAGTCCACTCTCCA- 71682
Query 178125 CTTG 178128
||||
Sbjct 71681 CTTG 71678
>seq2215
Length=151005
Score = 84.2 bits (92), Expect = 5e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||| || ||||| || || ||||||||||||||||||||| || |||
Sbjct 66997 CAGATCTTCGTGAAGACCCTCACGGGCAAGACGATCACCCTCGAGGTGGAATCGTCCGAC 66938
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGG 178014
|||||||| || ||||| ||||| ||||
Sbjct 66937 ACCATCGACAATGTCAAGTCCAAGATCCAGG 66907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203679070915720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |