Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq14 221 1e-52 >seq14 Length=670130 Score = 221 bits (244), Expect = 1e-52 Identities = 587/891 (66%), Gaps = 27/891 (3%) Strand=Plus/Plus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | |||| ||||| ||| | ||||| ||||| ||||| || || | | Sbjct 211671 AACACCTGTCTTTTGATAATCTGAAACTCTCTTTTCAAAGAAATTAGTCTTACCAACAAG 211730 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGCTGAAAATATCTTAGAGTACCCCAG 16020 ||| |||||||||||||| || || ||||| ||||| | | | ||| | |||| Sbjct 211731 AGAAATATTTTCCATAAAGTCGAAAGGATTTGTAGCATCATAAACCTTTTTATTTCCCAA 211790 Query 16021 TTCCGTAACTAATCTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAATTAAT 16080 | | |||||||| || ||| |||| || ||||||||||| ||||||||||| || Sbjct 211791 AGCAACGAGCAATCTATCAGCAACATATTCAATGTATTGACACATCAAGTCGCAATTCAT 211850 Query 16081 TCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACCGCTTC 16140 || | | | || |||||||| | || || ||| || ||| |||||||| ||||| Sbjct 211851 ACCAAGTAATGAGACAGGAAGAGCCTCGGTAAAGTATTCTTTTTCAATCACAACAGCTTC 211910 Query 16141 TTT---AATGATATCGG---TGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAA 16194 | ||| | ||| | ||| | |||| || ||| | | ||| || Sbjct 211911 AGTGACAATTTTCTCGACAATAGCTGGA---TCAG---GTTTATTTTGCAAGTGAGCGAA 211964 Query 16195 CATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAA 16254 | || ||| | || || |||||| ||||| |||| | ||||||||| || ||||| Sbjct 211965 TAATAAACATCCAAAATCTGTATGTAGACCTTCATCTCGACAGATAAGTTCATTAGAAAA 212024 Query 16255 AGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGA 16314 ||||| || |||||| |||| || || ||||| ||||| ||||||||||| || || Sbjct 212025 GGTTAAACCAGGCATTAAACCTCTCTTTTTCAACCAAAATATGGCAGCAAATGATCCAGA 212084 Query 16315 AAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTT 16374 || |||| ||| |||| || ||||||||| | |||||||||| | | || || | Sbjct 212085 GAAAAATACACCTTCAATAGTTGCAAAAGCAACTAATCGTTCCCCAAATAATGCTTCATC 212144 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 | |||||||||| ||| || || || ||||| ||||| || | | || Sbjct 212145 GTCGTTAATCCATTTCAAAGTCCAGTCAGCCTTCTGTTTGATACATGGGATGTTGACAAT 212204 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATA---TCGATTATATACGTATCAATCAGTAA 16491 || |||| | |||||||| |||| || | || || ||||| | | ||| Sbjct 212205 TGCATTAAGAAGAAAGTCTTTTTC---AATAGGGTCTCTAATGTAAGTATCTAACTGTAC 212261 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 | ||| |||| || ||||| || ||| | ||||| || |||||||| | | || Sbjct 212262 AGAGTAAGTTTCAGAATGTATATTTTCTGTCATGATCTGGAACCCATAGAAACTTTTGGC 212321 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || | ||||| || || | |||| || | | || ||||| || | ||| || Sbjct 212322 TTCAGGAATTTGAACCTCTGCTGAAAAGTTCTCAACTAAATTTTCATTAACAAGACCATC 212381 Query 16612 ACTTGCAGCAAAAAACGCCAATA----TGTGCTTAATGAAATAT--TTTTCGTCAGATGT 16665 | ||| |||||||| ||||||| || | | || | | | ||||||| | | Sbjct 212382 AGATGCTGCAAAAAAAGCCAATACTCTTGAGATAAAGAATCTCTCATTTTCGTTTAACTT 212441 Query 16666 AAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCAAAAGCT 16725 | | | ||| || || ||| || | | ||| | ||| |||| ||||| ||| Sbjct 212442 ---AGTGTCCCAGTCAGGTATATCCTTAGCAAGATCAATTTCCTCTGTAGTCCAGAAGGA 212498 Query 16726 AGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAA 16776 |||| | ||| || ||||||| |||||| ||| |||| || ||||| Sbjct 212499 AGCCTCGTGCTTCTTGTACATTTGCCAAATTTCACCATATTTAATTGGAAA 212549 Score = 136 bits (150), Expect = 4e-27 Identities = 592/928 (64%), Gaps = 19/928 (2%) Strand=Plus/Minus Query 15901 AACACCCATTCTTTGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAA 15960 |||||| | |||| |||||| ||| | || ||||| ||||| || || || |||| Sbjct 578606 AACACCGGCTTTTTGATAATCAGAAACTCTCTTCTCGAAAAAGTTTGTCTTACCAGCTAA 578547 Query 15961 AGATATATTTTCCATAAAATCAAAGGGATTAGTAGC--TGAAAATATCTTAGAGTACCCC 16018 || ||||| ||||| || ||||| ||||||||| | || |||| ||| || || Sbjct 578546 TGAAATATTCTCCATGAAGTCAAATGGATTAGTAACATTGTAAAT--CTTCTTGTTACCT 578489 Query 16019 AGTTCCGTAACTAAT---CTATCTGCTACAAATTCTATATATTGACACATTAAGTCGCAA 16075 || | |||||| | ||| || ||| |||| | |||||||||||| || | |||| Sbjct 578488 AGAGC---AACTAAAAGACGATCGGCAACATATTCAACATATTGACACATCAAATTGCAA 578432 Query 16076 TTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAAATTGTTGTTCTATCACAACC 16135 || || || | | | | |||||||| | ||| || ||| | || || || Sbjct 578431 TTCATACCAAGTAATGAGGCTGGAAGAGCATCTGTAAAGTATTCCTTCTCAATAGTTACA 578372 Query 16136 GCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTGTATGGTTTAGGTGTTTAAAC 16195 || ||| |||| || | | || | ||| ||| | | || ||| Sbjct 578371 GCCTCTGTAATTATCTTTTCAACAATAATTGGATCGGGTCTATTTTCCAAATGGGAAAAT 578312 Query 16196 ATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAA 16255 | || || || || || || || ||||| || | | ||| | ||| || |||||| Sbjct 578311 AATAAGCAAGCAAAATCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAA 578252 Query 16256 GTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCGAA 16315 || | ||||||||| |||| || ||||||||||| || | || || || || || Sbjct 578251 GTAAGGCCTGGCATTAAACCTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAG 578192 Query 16316 AAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTTTA 16375 || || ||||| ||||||| || ||||| | | ||||| || | || || ||| Sbjct 578191 AAAAAAATACCTTCAACAGCAGCGAAAGCAACAAGACGTTCAGCAAATAATGCTTCCTTA 578132 Query 16376 TTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTATG 16435 | || ||||||| | |||| || || || | || |||||| | |||| || Sbjct 578131 TCACTAATCCATCTTAAAGCCCAATCTGCCTTCTTCTTAATACAAGGAACATTTTCAATA 578072 Query 16436 GCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACTG 16495 || || || || || || | | ||| | ||||| || ||||| | | | || Sbjct 578071 GCATTGAATAAAAATTCACGCTCTTTAGAATCTTTAATATATGTGTCAATTA--ATAGTG 578014 Query 16496 TACATTTCT--GAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCT 16553 | || ||| |||||||| || || || || || || ||||| ||||| ||| | Sbjct 578013 AATATGTCTCAGAGTGTATATTTTCCATCATGATTTGGAAACCATAAAAGCACTTAGCTT 577954 Query 16554 CCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCAC 16613 | | | |||| || || | |||| ||| | | || || || || ||||| || Sbjct 577953 CTGGTGTTTGAACCTCAGCCGAAAAGTTTTCAACTAAATTTTCGTTAACAATACCATCTG 577894 Query 16614 TTGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTCAGATGTAAG---AA 16670 ||||| ||||| || || | | | ||| ||| | || || |||| | Sbjct 577893 AAGCAGCGAAAAAGGCTAAGACGCGTGAAATAAAAAAACGCTCATCTTTATTAAGCTTAT 577834 Query 16671 TATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA-AAAGCTAGCC 16729 | | |||||| | |||||| || ||| | |||||| | ||||| |||| | || Sbjct 577833 TTTCCCAATCACCAATATCTTTACTTAAATCAATTTCTTCAGCAGTCCAGAAAGAT-GCT 577775 Query 16730 ACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATACGACGTATCTA 16789 | |||||||||||||||| ||| || || | | | | || || || | ||| |||| Sbjct 577774 TCAGCCTTTTTATACATTTGCCAGATCTCGTGGAACTTAATTGGGAAGAGGACAAATCTT 577715 Query 16790 TCTAAGGATTCCTTTAACACGGGTTCAT 16817 | |||| |||| | |||||||| Sbjct 577714 CTTTTATTTTCCATTAAAATGGGTTCAT 577687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511413530595520