Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq21 176 7e-39 seq8 145 1e-29 seq12 134 2e-26 seq5 118 2e-21 >seq21 Length=453462 Score = 176 bits (194), Expect = 7e-39 Identities = 345/509 (68%), Gaps = 12/509 (2%) Strand=Plus/Minus Query 205310 CTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttt 205369 |||||| |||| | || || || ||||||||| |||| || || |||| | Sbjct 131607 CTACTTTTCTTGTAATATTCAACTTTGGAAATTCCCTTGGCACTCGAGATATCTGTTCCT 131548 Query 205370 ttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCAT 205429 |||| ||| || |||||| | ||| | ||||||| |||| | | |||||||| ||| Sbjct 131547 TTAAAGCATCAACATGATTTAAATAAACGTGTGCATCTCCAAGAGTGTGAATAAAATCAC 131488 Query 205430 ATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACAT 205489 | | || | | ||| |||||||| | || || | | ||| |||| | Sbjct 131487 CACACTCCATATCACAAACATGAGCAATCATTTTTGTTAAAAGAGCATATGATGCAATGT 131428 Query 205490 TAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATAT- 205548 |||| || || |||||||||||||| |||||||| |||| ||| | ||| | | Sbjct 131427 TAAAGGGGACTCCTAAACCCATATCGCAAGATCTTTGGTACAAAACACAAGAAAGCTCTG 131368 Query 205549 -----TTATTATT-----AATTA-CATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597 |||| || | ||| ||| ||||||| |||| |||||| ||||| | | Sbjct 131367 GTTTCTTATCCTTTGGAAAGTTAACATAAAATTGTGCAAACATATGACATGGTGGCAGAG 131308 Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtt 205657 |||| ||| || ||| |||||||||||| | ||| || || ||| | | || | Sbjct 131307 CCATTTTTGAAAAATCCGCAGGATTCCAGGCAGATAAAATGATTCTTCGATCATATGGGT 131248 Query 205658 tattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTG 205717 ||||||||| ||||| |||| | | ||| ||||||| || ||| |||||||| | Sbjct 131247 TATTTTTTAATTTATAAATAACTTCCGCTAACTGATCAACACCCTGACCTGTATAATCCG 131188 Query 205718 TATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTA 205777 ||| || ||||||||||||||||||| | |||||| || ||||| || ||||| | Sbjct 131187 CATCACAATTTGTATATTTAGCACCAAAATGCCTCCATTGGAAGCCATATACAGGACCCA 131128 Query 205778 AATCACCTTCTTTTCTATCATTAAAACCA 205806 |||||| ||| | | ||| | | |||| Sbjct 131127 GATCACCCTCTCTATTTTCAGTTAGACCA 131099 Score = 161 bits (178), Expect = 1e-34 Identities = 177/233 (76%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | ||||| ||||| || ||||| || ||| | ||| | ||| | | | Sbjct 371524 ATGCAGATTTTTGTCAAGACGCTAACGGGTAAAACCATCACTCTTGAGGTCGAATCCAGT 371583 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||| |||| ||||| || || || ||||| || ||||| || || || ||||| Sbjct 371584 GATACAATCGATAATGTTAAATCA-AAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 371642 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| || |||||| |||| ||| |||| || ||| ||||| || Sbjct 371643 ACAACGTTTAATTTTTGCTGGTAAACAACTAGAAGATGGTCGTACTTTATCTGATTACAA 371702 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 || ||||| || || || || || ||||||||| | ||| |||||||||||| Sbjct 371703 CATCCAAAAGGAGTCTACCTTACACTTGGTTTTAAGATTAAGAGGTGGTATTA 371755 >seq8 Length=1087023 Score = 145 bits (160), Expect = 1e-29 Identities = 176/237 (74%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594 ||||||||| || || | || || | || || ||||| || ||| | ||| ||||| | Sbjct 676916 TACAATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATTACTCTCGAGGTTGAATC 676857 Query 124595 AAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653 ||| || ||| ||| |||| || ||||||||||| || ||||| || || || | Sbjct 676856 CTCTGACACTATTGACAATGTTAAGTCA-AAAATTCAAGACAAGGAAGGAATTCCTCCAG 676798 Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713 | |||||||| | || ||||| || ||||||||||| || | || || ||| || | Sbjct 676797 ACCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGACGTACCTTATCTGACT 676738 Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770 | || |||||||| ||||| ||||| ||||||||||| | ||| |||||||||||| Sbjct 676737 ACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTAAGAGGTGGTATTA 676681 >seq12 Length=712717 Score = 134 bits (148), Expect = 2e-26 Identities = 172/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || ||||| || || || ||| | ||| |||| || Sbjct 151152 AATGCAGATTTTTGTTAAAACCCTTACAGGGAAGACAATTACTCTTGAGGTTGAGTCATC 151093 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||| || ||| |||| | ||| || ||||||||||| || || || || || ||||| Sbjct 151092 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 151033 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | |||||||| || || ||||| || ||| | || || ||| || || || Sbjct 151032 ACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGTACCTTATCTGACTACAA 150973 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||||||||| ||||||||| | | || |||||||| ||| || Sbjct 150972 CATCCAAAAGGAATCAACTTTACATTTGGTTCTCAGATTGAGAGGTGGTGGTAAGAA 150916 >seq5 Length=1301127 Score = 118 bits (130), Expect = 2e-21 Identities = 170/237 (72%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||| || | ||| | || || Sbjct 1173872 ATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGTAGAGTCATCC 1173813 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| ||| |||| || || || || || || ||||| || || || || || Sbjct 1173812 GATACTATTGACAATGTTAAGTCA-AAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 1173754 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||| | | || ||||| || || |||||||| ||| | || || ||| ||||| || Sbjct 1173753 ACAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGATGGACGTACTTTATCTGATTACAA 1173694 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774 || ||||| ||||||||||| ||||||||||| | ||| |||||||| ||| || Sbjct 1173693 CATCCAAAAGGAATCAACTTTACATTTGGTTTTGAGATTAAGAGGTGGTGGTAAGAA 1173637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755454715724800