Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03-
01] 136 sequences; 24,815,695 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq21 176 7e-39
seq8 145 1e-29
seq12 134 2e-26
seq5 118 2e-21
>seq21
Length=453462
Score = 176 bits (194), Expect = 7e-39
Identities = 345/509 (68%), Gaps = 12/509 (2%)
Strand=Plus/Minus
Query 205310 CTACTTGTCtttttatttttaattttGGAAATGGGTTTGGTGTACGTTCTAATTGttttt 205369
|||||| |||| | || || || ||||||||| |||| || || |||| |
Sbjct 131607 CTACTTTTCTTGTAATATTCAACTTTGGAAATTCCCTTGGCACTCGAGATATCTGTTCCT 131548
Query 205370 ttAATCCATTAATATGATTAACATATATATGTGCATTACCAATATTATGAATAAATTCAT 205429
|||| ||| || |||||| | ||| | ||||||| |||| | | |||||||| |||
Sbjct 131547 TTAAAGCATCAACATGATTTAAATAAACGTGTGCATCTCCAAGAGTGTGAATAAAATCAC 131488
Query 205430 ATGGTTTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAAACTATAACTAGCAACAT 205489
| | || | | ||| |||||||| | || || | | ||| |||| |
Sbjct 131487 CACACTCCATATCACAAACATGAGCAATCATTTTTGTTAAAAGAGCATATGATGCAATGT 131428
Query 205490 TAAATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATAT- 205548
|||| || || |||||||||||||| |||||||| |||| ||| | ||| | |
Sbjct 131427 TAAAGGGGACTCCTAAACCCATATCGCAAGATCTTTGGTACAAAACACAAGAAAGCTCTG 131368
Query 205549 -----TTATTATT-----AATTA-CATGAAATTGTACAAAACAATGACAAGGTGGTATAA 205597
|||| || | ||| ||| ||||||| |||| |||||| ||||| | |
Sbjct 131367 GTTTCTTATCCTTTGGAAAGTTAACATAAAATTGTGCAAACATATGACATGGTGGCAGAG 131308
Query 205598 CCATATTTTCAACATCTATAGGATTCCAGGCTGTTAATATTATATTTCTAGATTCAGGtt 205657
|||| ||| || ||| |||||||||||| | ||| || || ||| | | || |
Sbjct 131307 CCATTTTTGAAAAATCCGCAGGATTCCAGGCAGATAAAATGATTCTTCGATCATATGGGT 131248
Query 205658 tattttttattttatttatAATATGTGTTAATTGATCAAATCCTTGATTTGTATAATTTG 205717
||||||||| ||||| |||| | | ||| ||||||| || ||| |||||||| |
Sbjct 131247 TATTTTTTAATTTATAAATAACTTCCGCTAACTGATCAACACCCTGACCTGTATAATCCG 131188
Query 205718 TATCCATATCAATATATTTAGCACCAAAATGACGCCATTGAAAACCATAAACTGGACCTA 205777
||| || ||||||||||||||||||| | |||||| || ||||| || ||||| |
Sbjct 131187 CATCACAATTTGTATATTTAGCACCAAAATGCCTCCATTGGAAGCCATATACAGGACCCA 131128
Query 205778 AATCACCTTCTTTTCTATCATTAAAACCA 205806
|||||| ||| | | ||| | | ||||
Sbjct 131127 GATCACCCTCTCTATTTTCAGTTAGACCA 131099
Score = 161 bits (178), Expect = 1e-34
Identities = 177/233 (76%), Gaps = 2/233 (1%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | ||||| ||||| || ||||| || ||| | ||| | ||| | | |
Sbjct 371524 ATGCAGATTTTTGTCAAGACGCTAACGGGTAAAACCATCACTCTTGAGGTCGAATCCAGT 371583
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||||| |||| ||||| || || || ||||| || ||||| || || || |||||
Sbjct 371584 GATACAATCGATAATGTTAAATCA-AAGATCCAAGACAAGGAAGGAATTCCCCCAGATCA 371642
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||| | | |||||||| || |||||| |||| ||| |||| || ||| ||||| ||
Sbjct 371643 ACAACGTTTAATTTTTGCTGGTAAACAACTAGAAGATGGTCGTACTTTATCTGATTACAA 371702
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
|| ||||| || || || || || ||||||||| | ||| ||||||||||||
Sbjct 371703 CATCCAAAAGGAGTCTACCTTACACTTGGTTTTAAGATTAAGAGGTGGTATTA 371755
>seq8
Length=1087023
Score = 145 bits (160), Expect = 1e-29
Identities = 176/237 (74%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 124535 TACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGC 124594
||||||||| || || | || || | || || ||||| || ||| | ||| ||||| |
Sbjct 676916 TACAATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATTACTCTCGAGGTTGAATC 676857
Query 124595 AAATGATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTG 124653
||| || ||| ||| |||| || ||||||||||| || ||||| || || || |
Sbjct 676856 CTCTGACACTATTGACAATGTTAAGTCA-AAAATTCAAGACAAGGAAGGAATTCCTCCAG 676798
Query 124654 ATCAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATT 124713
| |||||||| | || ||||| || ||||||||||| || | || || ||| || |
Sbjct 676797 ACCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGACGTACCTTATCTGACT 676738
Query 124714 ATAATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTA 124770
| || |||||||| ||||| ||||| ||||||||||| | ||| ||||||||||||
Sbjct 676737 ACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTAAGAGGTGGTATTA 676681
>seq12
Length=712717
Score = 134 bits (148), Expect = 2e-26
Identities = 172/237 (73%), Gaps = 0/237 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | || || || ||||| || || || ||| | ||| |||| ||
Sbjct 151152 AATGCAGATTTTTGTTAAAACCCTTACAGGGAAGACAATTACTCTTGAGGTTGAGTCATC 151093
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||| || ||| |||| | ||| || ||||||||||| || || || || || |||||
Sbjct 151092 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 151033
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||| | | |||||||| || || ||||| || ||| | || || ||| || || ||
Sbjct 151032 ACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGTACCTTATCTGACTACAA 150973
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| ||||| ||||||||||| ||||||||| | | || |||||||| ||| ||
Sbjct 150972 CATCCAAAAGGAATCAACTTTACATTTGGTTCTCAGATTGAGAGGTGGTGGTAAGAA 150916
>seq5
Length=1301127
Score = 118 bits (130), Expect = 2e-21
Identities = 170/237 (72%), Gaps = 2/237 (1%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| || ||| | || || || || || || ||||| || | ||| | || ||
Sbjct 1173872 ATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGTAGAGTCATCC 1173813
Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||| ||| ||| |||| || || || || || || ||||| || || || || ||
Sbjct 1173812 GATACTATTGACAATGTTAAGTCA-AAGATCCAGGACAAGGAAGGAATCCCTCCAGACCA 1173754
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717
|||| | | || ||||| || || |||||||| ||| | || || ||| ||||| ||
Sbjct 1173753 ACAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGATGGACGTACTTTATCTGATTACAA 1173694
Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAA 124774
|| ||||| ||||||||||| ||||||||||| | ||| |||||||| ||| ||
Sbjct 1173693 CATCCAAAAGGAATCAACTTTACATTTGGTTTTGAGATTAAGAGGTGGTGGTAAGAA 1173637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755454715724800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |