Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq21 113 5e-20 seq8 95.1 1e-14 seq5 86.0 7e-12 >seq21 Length=453462 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | || ||||| || || || ||||||||| || |||||||||| Sbjct 371750 CCACCTCTTAATCTTAAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAATCAGAT 371691 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || ||||| || |||||||| || || | || || || || | || Sbjct 371690 AAAGTACGACCATCTTCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGGGGA 371631 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | |||||||| ||| ||| ||| | | | | || || || ||||| || Sbjct 371630 ATTCCTTCCTTGTCTTGGATCTTTGATTTAACATTATCGATTGTATCACTGGATTCGACC 371571 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | ||||||||||| |||||||||||||| ||||| || ||||| Sbjct 371570 TCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGACAAAAATCTGCAT 371524 >seq8 Length=1087023 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | ||| |||||||| || ||| ||||||||||| ||||| |||| Sbjct 676686 CCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGAT 676745 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | || || |||| |||| || ||||| || || || | || || ||||| | || Sbjct 676746 AAGGTACGTCCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGAGGA 676805 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | ||||||| | ||| |||||| | | | | | | | ||||| ||||| || Sbjct 676806 ATTCCTTCCTTGT-CTTGAATTTTTGACTTAACATTGTCAATAGTGTCAGAGGATTCAAC 676864 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||| || |||||||| || || | || || || ||||| |||||| Sbjct 676865 CTCGAGAGTAATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCATT 676913 >seq5 Length=1301127 Score = 86.0 bits (94), Expect = 7e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || |||||||| | ||| |||||||| || || |||||||| || |||||||||| Sbjct 1173646 CCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGAT 1173705 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 | ||| || | || |||| ||||||||||| || || | || || ||||| | || Sbjct 1173706 AAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGGG 1173765 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | | ||||||||| ||| ||| || | | | | || ||| || || || Sbjct 1173766 ATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGATGACTCTACC 1173825 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 |||| || || || || || || || || || ||||| || ||||| || Sbjct 1173826 TCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCATCTT 1173875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571816627910080