Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03-
01] 136 sequences; 24,815,695 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq14 266 3e-66
>seq14
Length=670130
Score = 266 bits (294), Expect = 3e-66
Identities = 621/921 (67%), Gaps = 27/921 (3%)
Strand=Plus/Minus
Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002
||||||||| ||| ||||||||| || || || ||||| || || |||||||||||||
Sbjct 578597 TTTTTGATAATCAGAAACTCTCTTCTCGAAAAAGTTTGTCTTACCAGCTAATGAAATATT 578538
Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTAT---TTATCGCATCCCAATTCCAA 16059
||||| || ||||| ||||| | |||| | ||| || | | | || | |||
Sbjct 578537 CTCCATGAAGTCAAATGGATTAGT--AACATT-GTAAATCTTCTTGT-TACCTAGAGCAA 578482
Query 16060 CAATAAT-CTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTA 16118
| | || | ||| || ||| |||| | ||| || ||| |||| || ||||| || |
Sbjct 578481 CTAAAAGACGATCGGCAACATATTCAACATATTGACACATCAAATTGCAATTCATACCAA 578422
Query 16119 TTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGA 16178
|||| | || | || ||||| || | | || || ||| | || || || | |
Sbjct 578421 GTAATGAGGCTGGAAGAGCATCTGTAAAGTATTCCTTCTCAATAGTTACAGCCTCTGTAA 578362
Query 16179 TTATATCTCTTACTACACTATTTAACGGA--GGGTTTAAT----AAGTGTTTAAACATTA 16232
|||| | || | ||| || || ||| |||| || | || || ||| | ||
Sbjct 578361 TTATCT---TTTCAACAATAATT---GGATCGGGTCTATTTTCCAAATGGGAAAATAATA 578308
Query 16233 TACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAA 16292
|||||||||||| || | ||||| || | || || || || || ||||| ||||
Sbjct 578307 AGCAAGCAAAATCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAAGTAA 578248
Query 16293 GACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGA 16352
| |||||||||| |||| ||||| | ||| || |||| || || |||||||| || |
Sbjct 578247 GGCCTGGCATTAAACCTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAGAAAA 578188
Query 16353 ATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttacttt 16412
| ||||||||||| || || || ||||| | || ||| | | | | ||| |
Sbjct 578187 AAATACCTTCAACAGCAGCGAAAGCAACAAGACGTTCAGCAAATAATGCTTCCTTA-TCA 578129
Query 16413 cta-tccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCA 16471
||| ||||| || |||||||| ||| || | |||| ||| | || || || |||
Sbjct 578128 CTAATCCATCTTAAAGCCCAATCTGCCTTCTTCTTAATACAAGGAACATTTTCAATAGCA 578069
Query 16472 TTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATAC 16531
|| |||||| | | ||||| |||| |||||| || || |||| || |||
Sbjct 578068 TTGAATAAAAATTCACGCTCTTTAGAATCTTTAATATATGTGTCAATTAATAGTGAATAT 578009
Query 16532 ATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGAT 16591
| || || || ||||| ||||| || || |||||||||||||| ||||||| | |
Sbjct 578008 GTCTCAGAGTGTATATTTTCCATCATGATTTGGAAACCATAAAAGCACTTAGCTTCTGGT 577949
Query 16592 ATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCT 16651
|||| || |||| |||| |||| |||| ||||||||||| || ||||| |||
Sbjct 577948 GTTTGAACCTCAGCCGAAAAGTTTTCAACTAAATTTTCGTTAACAATACCATCTGAAGCA 577889
Query 16652 GCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGT-TATCTGAAAGTT--TTAAC 16708
|| ||||| || | | | || ||||||| || | | | | || || || |
Sbjct 577888 GCGAAAAAGGCTAAGACGCGTGAAATAAAAAAACGCTCATCTTTATTAAGCTTATTTTCC 577829
Query 16709 CAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCC 16768
|| ||| || |||||| |||||| | ||||| ||||||| ||||| || |||||
Sbjct 577828 CAATCACCAATATCTTTACTTAAATCAATTTCTTCAGCAGTCCAGAAAGATGCTTCAGCC 577769
Query 16769 TTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACATA-CTTATTTAA 16827
||||||||||||| ||| || || | | | ||| || || | ||| | ||| ||| |
Sbjct 577768 TTTTTATACATTTGCCAGATCTCGTGGAACTTAATTGGGAAGAGGACAAATCTTCTTTTA 577709
Query 16828 TGTTGGTTTTAAAATAGGTTC 16848
| || ||||||| |||||
Sbjct 577708 T-TTTCCATTAAAATGGGTTC 577689
Score = 241 bits (266), Expect = 1e-58
Identities = 594/890 (67%), Gaps = 31/890 (3%)
Strand=Plus/Plus
Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003
|||||||| || ||||||||||||||||||||| || || || | | |||||||||
Sbjct 211681 TTTTGATAATCTGAAACTCTCTTTTCAAAGAAATTAGTCTTACCAACAAGAGAAATATTT 211740
Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATA---GTATTTATCGCATCCCAATTCCAAC 16060
|||||||| || ||||||||| | | | ||| | ||||| |||||| | |
Sbjct 211741 TCCATAAAGTCGAAAGGATTTGTAGCATCATAAACCTTTTTAT---TTCCCAAAGCAACG 211797
Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120
| |||||||| || ||| |||| || || || ||| || || || ||||| || | |
Sbjct 211798 AGCAATCTATCAGCAACATATTCAATGTATTGACACATCAAGTCGCAATTCATACCAAGT 211857
Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180
||| ||||| | || || || || | | |||||| || ||| |||||| |||
Sbjct 211858 AATGAGACAGGAAGAGCCTCGGTAAAGTATTCTTTTTCAATCACAACAGCTTCAGTGACA 211917
Query 16181 ATATCTCTTACTACACTATTTAACGGA--GGGTTTAAT----AAGTGTTTAAACATTATA 16234
|| | ||| | ||| || | ||| |||||| | ||||| || | || |
Sbjct 211918 AT-TTTCT--CGACAATAGCT---GGATCAGGTTTATTTTGCAAGTGAGCGAATAATAAA 211971
Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294
|| ||||||| ||| | ||||| || | || || | || || ||||| || | |
Sbjct 211972 CATCCAAAATCTGTATGTAGACCTTCATCTCGACAGATAAGTTCATTAGAAAAGGTTAAA 212031
Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354
|| ||||||| |||| ||||| | ||||||||| || |||||||| ||||| || |||
Sbjct 212032 CCAGGCATTAAACCTCTCTTTTTCAACCAAAATATGGCAGCAAATGATCCAGAGAAAAAT 212091
Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTA-CGTTCTAtttttactttc 16413
| |||||||| | ||||| ||||| ||||| || || | | || | | ||
Sbjct 212092 ACACCTTCAATAGTTGCAAAAGCAACTAATCGTTCCCCAAATAATGCTTCATCGTCGTT- 212150
Query 16414 tatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATT 16473
|||||||| || ||| | || || ||||| | ||| ||||| | ||||||||
Sbjct 212151 AATCCATTTCAAAGTCCAGTCAGCCTTCTGTTTGATACATGGGATGTTGACAATTGCATT 212210
Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533
|| | | | | |||||| | ||| ||| |||||||||| ||| | || |
Sbjct 212211 AAGAAGAAAGTCTTTTTCAATAGGGTCTCTAATGTAAGTATCTAACTGTACAGAGTAAGT 212270
Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593
||| ||||| ||||| || | ||||| || ||||| || | | | ||||| | ||
Sbjct 212271 TTCAGAATGTATATTTTCTGTCATGATCTGGAACCCATAGAAACTTTTGGCTTCAGGAAT 212330
Query 16594 TTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGC 16653
||| || || | |||| | || |||| ||||| ||||| | ||||| |||||
Sbjct 212331 TTGAACCTCTGCTGAAAAGTTCTCAACTAAATTTTCATTAACAAGACCATCAGATGCTGC 212390
Query 16654 AAAAAACGCAAGTA----TGTGTTTAATAAAAttt--ttttCG-TTATCTGAAAGTTTTA 16706
|||||| || | || || | | || || | | |||||| ||| || | ||
Sbjct 212391 AAAAAAAGCCAATACTCTTGAGATAAAGAATCTCTCATTTTCGTTTAACTTAGTGT---- 212446
Query 16707 ACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAG 16766
|||||||| | ||| || | | ||| | || ||| |||||| || ||||| |
Sbjct 212447 CCCAGTCAGGTATATCCTTAGCAAGATCAATTTCCTCTGTAGTCCAGAAGGAAGCCTCGT 212506
Query 16767 CCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAACA 16816
||| || ||||||| ||| || || | || ||| ||||||| ||||
Sbjct 212507 GCTTCTTGTACATTTGCCAAATTTCACCATATTTAATTGGAAACATAACA 212556
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462511213729600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |