Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq14 143 2e-29 seq5 87.8 2e-12 seq1 87.8 2e-12 >seq14 Length=670130 Score = 143 bits (158), Expect = 2e-29 Identities = 585/912 (64%), Gaps = 39/912 (4%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCA-GACATTTGGAACATGTACAAAAAGGCAGA 57595 ||||||||| | || || ||| | | |||| || || ||| | ||||| |||||||| || Sbjct 577716 AGATTTGTCCTCTTCCCAATTAAGT-TCCACGAGATCTGGCAAATGTATAAAAAGGCTGA 577774 Query 57596 AGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGA--- 57652 |||||| || ||||| | |||||| | || | ||| ||| | | |||||||| Sbjct 577775 AGCATCTTTCTGGACTGCTGAAGAAATTGATTTAAGTAAAGATATTGGTGATTGGGAAAA 577834 Query 57653 TTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATC 57712 | || || || |||| | ||||||| || ||| || || |||||||| || || Sbjct 577835 TAAGCTTAATAAAGATGAGCGTTTTTTTATTTCACGCGTCTTAGCCTTTTTCGCTGCTTC 577894 Query 57713 CGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGA 57772 ||||||||||||||||| ||||| || |||| ||||| || || ||| | || Sbjct 577895 AGATGGTATTGTTAACGAAAATTTAGTTGAAAACTTTTCGGCTGAGGTTCAAACACCAGA 577954 Query 57773 GGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 || | |||||||| || || ||| | || ||||| | || || || | ||||| Sbjct 577955 AGCTAAGTGCTTTTATGGTTTCCAAATCATGATGGAAAATATACACTCTGAGACATATTC 578014 Query 57833 GCTACTCATCGATACGTACGTGAAGGA---CAACGA-CGAGAAACGTAGACTGTTCAACG 57888 ||| | || || || || | || || || || || ||| | | ||||| | Sbjct 578015 ACTATTAATTGACACATATATTAAAGATTCTAAAGAGCGTGAATTTT----TATTCAATG 578070 Query 57889 CGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAA 57948 | || |||| | || || ||||||||||| ||| | | | |||||| | Sbjct 578071 CTATTGAAAATGTTCCTTGTATTAAGAAGAAGGCAGATTGGGCTTTAAGATGGAT---TA 578127 Query 57949 GCGCCACG---GCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATAT 58005 | | | | || || || || | || | || ||||| || || |||||||| | Sbjct 578128 GTGATAAGGAAGCATTATTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTTGAAGGTATTT 578187 Query 58006 TCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 | || || || || || | || || ||| | || || | || | ||||| |||| Sbjct 578188 TTTTCTCTGGTTCTTTCGCATCTATTTTCTGGTTAAAAAAGAGAGGTTTAATGCCAGGCC 578247 Query 58066 TGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 | || ||| || || ||||| | || || || ||||| || ||||||||||| ||| Sbjct 578248 TTACTTTTTCTAATGAATTGATCTGTCGTGATGAAGGTCTTCACACTGATTTTGCTTGCT 578307 Query 58126 TAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA-TCTTG-----GACATTA 58179 || | | || || | | |||| ||| |||| | | ||| | || | Sbjct 578308 TATTATTTTCCCATTTGGAAAATAGACC------CGATCCAATTATTGTTGAAAAGATAA 578361 Query 58180 TCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGC 58239 | || ||||| || | || || || || | | || || || || || | | | | Sbjct 578362 TTACAGAGGCTGTAACTATTGAGAAGGAATACTTTACAGATGCTCTTCCAGCCTCATTAC 578421 Query 58240 TCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTT---- 58295 | |||||||| ||||||||| | || |||| | ||||||||| | ||| Sbjct 578422 TTGGTATGAATTGCAATTTGATGTGTCAATATGTTGAATATGTTGCCGATCGTCTTTTAG 578481 Query 58296 TTGCTCGAACTGATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAAT 58355 |||||| | | | || || |||||| | ||||| ||||| || ||| | Sbjct 578482 TTGCTCTAGGTAACAAGA-AG---ATTTACAATGTTACTAATCCATTTGACTTCATGGAG 578537 Query 58356 CTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAA 58415 || || | | || ||||||||||||||||| || | |||| || ||||||||| Sbjct 578538 AATATTTCATTAGCTGGTAAGACAAACTTTTTCGAGAAGAGAGTTTCTGATTATCAAAAA 578597 Query 58416 TACGGCGTGATG 58427 ||| || ||| Sbjct 578598 GCCGGTGTTATG 578609 Score = 132 bits (146), Expect = 4e-26 Identities = 589/922 (64%), Gaps = 27/922 (3%) Strand=Plus/Minus Query 57508 ATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCAG 57567 ||||||||||| | | || || || |||||||| |||||||| ||| ||||| | Sbjct 212590 ATGAACCACTTCTCAAGGAAAACAAACGCAGATTTGTTATGTTTCCAATTAAATATGGTG 212531 Query 57568 ACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACC 57627 | |||||| | |||||||| ||| || || || || ||||| || ||| | || | Sbjct 212530 AAATTTGGCAAATGTACAAGAAGCACGAGGCTTCCTTCTGGACTACAGAGGAAATTGATC 212471 Query 57628 TGTCTAAGGATCTGAGCGATTGGGA---TTCCCTCAAAGAATCTGAGAGAAATTTTAT-T 57683 | |||||||| | || ||||| | | || ||| ||||||| ||||| | Sbjct 212470 TTGCTAAGGATATACCTGACTGGGACACTAAGTTAAACGAAAATGAGAGATTCTTTATCT 212411 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAA 57743 || | || ||||| ||||| || ||||| |||||| ||||||| || ||||| || || Sbjct 212410 CAAGA-GTATTGGCTTTTTTTGCAGCATCTGATGGTCTTGTTAATGAAAATTTAGTTGAG 212352 Query 57744 AGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCC 57803 | |||||| ||| || ||| | | || || | | | || || || || || | Sbjct 212351 AACTTTTCAGCAGAGGTTCAAATTCCTGAAGCCAAAAGTTTCTATGGGTTCCAGATCATG 212292 Query 57804 ATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAAC 57863 | ||||| | ||||| |||| || || ||| | ||||| ||| | | || | | Sbjct 212291 ACAGAAAATATACATTCTGAAACTTACTCTGTACAGTTAGATACTTACATTA--GAGACC 212234 Query 57864 GACGAGAAACGTAGACTGT----TCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAA 57919 |||| ||||| | | || || || | | || || ||| |||| Sbjct 212233 CTATTGAAA--AAGACTTTCTTCTTAATGCAATTGTCAACATCCCATGTATCAAACAGAA 212176 Query 57920 GGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAAT 57979 ||| || ||| | | |||||||| || || || || | || | || | Sbjct 212175 GGCTGACTGGACTTTGAAATGGATTAACGACGATGAAGCATTATTTGGGGAACGATTAGT 212116 Query 57980 CGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGAT 58039 || || || | | |||||| |||| || || || ||||| || ||||||||| | Sbjct 212115 TGCTTTTGCAACTATTGAAGGTGTATTTTTCTCTGGATCATTTGCTGCCATATTTTGGTT 212056 Query 58040 GAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGA 58099 ||| || | || | ||||| || | || ||| || || | || | || || || Sbjct 212055 GAAAAAGAGAGGTTTAATGCCTGGTTTAACCTTTTCTAATGAACTTATCTGTCGAGATGA 211996 Query 58100 GGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACC-GA-CG 58157 ||||| ||||| ||||||| || || | | | ||||| | |||||||| || | Sbjct 211995 AGGTCTACATACAGATTTTGGATGTTTATTATTCGCTCACTTGCAAAATAAACCTGATCC 211936 Query 58158 CGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACC 58217 | || | || | | ||| |||| || || || | ||| ||||| || | | ||| Sbjct 211935 AGCTATTG--TCGAGAAAATTGTCACTGAAGCTGTTGTGATTGAAAAAGAATACTTTACC 211878 Query 58218 GAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAG 58277 || || || || || | | || |||||||| || ||||||| | |||||||| Sbjct 211877 GAGGCTCTTCCTGTCTCATTACTTGGTATGAATTGCGACTTGATGTGTCAATACATTGAA 211818 Query 58278 TTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA-----TTACAACACGA 58332 | |||||| || ||| ||||||| || || | || | ||| | | | Sbjct 211817 TATGTTGCTGATAGA---TTGCTCG--TTGCTTTGGGAAATAAAAAGGTTTATGATGCTA 211763 Query 58333 AAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaa 58392 |||||| || || |||||| | || || || | || ||||| || || || |||| Sbjct 211762 CAAATCCTTTCGACTTTATGGAAAATATTTCTCTTGTTGGTAAGACTAATTTCTTTGAAA 211703 Query 58393 aaaaaGTTAGCGAATATCAAAA 58414 | | |||| || |||||||| Sbjct 211702 AGAGAGTTTCAGATTATCAAAA 211681 >seq5 Length=1301127 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 31185 AATCA--AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGT 31242 ||||| || ||||| ||||| || || || || || || || || || ||| |||| || Sbjct 1173882 AATCACCAAGATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGT 1173823 Query 31243 TGAACCGTCCGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGC 31301 || | ||||| | | | || | || || || ||| | |||||||||||| | | Sbjct 1173822 AGAGTCATCCGATACTATTGACAATGTTAAGTCAAAGA-TCCAGGACAAGGAAGGAATCC 1173764 Query 31302 CGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATG 31360 | || ||||| || ||| |||| || ||||| || || || ||||| | | | ||| | Sbjct 1173763 CTCCAGACCAACAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGA-TGGACGTACTTTA 1173705 Query 31361 AGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| ||||| ||| | ||| |||| | ||| | || || ||| Sbjct 1173704 TCTGATTACAACATCCAAAAGGAATCAACTTTACATTTGGTTTTGAGATTAAGAGGTGGT 1173645 >seq1 Length=2214157 Score = 87.8 bits (96), Expect = 2e-12 Identities = 462/730 (63%), Gaps = 16/730 (2%) Strand=Plus/Plus Query 23237 CCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGG 23296 ||||||| || || |||| || || || |||||||| |||| ||| || | || Sbjct 31861 CCTTCTTTTTCATATTTTTCATATAATGCTTCAAATTCATCACCATAAACATCTGAAAGA 31920 Query 23297 CCGGGCGATTGCATC--GGACACATGA-GACTCCACATTGAGTCATTTT---CAACGCGT 23350 || || || | ||| || | || | ||| |||||| |||||| |||| | | Sbjct 31921 CCAGG-GACTTCATTTGGGGAAAATAATGAC----CATTGAC-CATTTTGTTCAACTCTT 31974 Query 23351 CTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCT 23410 |||||||| | ||| | ||||||| || || | || | || | | || ||| Sbjct 31975 CTCATAAATAAATCAGAAATCCATAATGCTGCAAATAAATCTCTTGCTCTAATTTCTTCT 32034 Query 23411 TTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGG 23470 || || || ||| | | ||| | | | || || || || |||||||| || || | Sbjct 32035 TTACCATGATTTTTTCTAATATCAATATAATCAAAAACATCAGCATGCCATGGTTCCAAA 32094 Query 23471 TAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTG 23530 || | ||||| || || ||||| ||||| || || ||||| || || | || || ||| Sbjct 32095 TACATTGCAAAAGCACCAGGTCTTTTATTACCACCTTGATCAACATATCTTGCAGTATTG 32154 Query 23531 TTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTC 23590 || | || | || ||| || | | ||| || || | || | || || | | Sbjct 32155 TTAAAAACACGTAACATTGGAATAATACCATTAGATGTACCATTTGTACCTGCAATATAA 32214 Query 23591 GAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATC 23650 ||||| | || || || |||| || | ||| || ||||| | ||||| || || Sbjct 32215 GAACCAGTACTTCTAATATTATGAATATGAAGACCAATTCCTCCAGCTGATTTTGAAATT 32274 Query 23651 ATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACC 23710 | || || ||| | ||| || || || || || || || ||||| | || | Sbjct 32275 AAAGCACAAGTTTTTAAAGTATCATAAATACCTTCAATTGAATCTTCTTTCATAGCAATA 32334 Query 23711 AAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCG 23770 | ||||| ||||||||||| | || || ||| | || || | || || || Sbjct 32335 AGAAAACAAGAAGACATTTGTGGTTGAGGAGTACCAGCATTAAATAAAGTGGGAGAAGCA 32394 Query 23771 TGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830 || || || ||| ||||||| ||| || || || ||| | ||||| || || Sbjct 32395 TGAGTGAAATATTTTAATGACATTAAATTATAGGTTTCAATGACTTTTTCAATATCATCA 32454 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC--GACCGTGACGC 23888 || || ||||| | || || | ||| || | | ||| ||||| || | | | | | Sbjct 32455 CCATGAATACCAACAGCAACTCTCATAATTAAATGTTGTGGTCTTTCAGCAACTTTA--C 32512 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 | | || | | || || ||||| | || | |||||||| ||||| | | ||| | | Sbjct 32513 CATCAAGTCTTAAAAGGTATGATCTTTCAAGAGTTTTAAAACCAAAGAAATTATATTGGA 32572 Query 23949 AGTCACGATC 23958 | |||||||| Sbjct 32573 AATCACGATC 32582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445765642197120