Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq14 125 1e-23 seq21 118 2e-21 >seq14 Length=670130 Score = 125 bits (138), Expect = 1e-23 Identities = 308/465 (66%), Gaps = 24/465 (5%) Strand=Plus/Minus Query 101901 ATTTGGCGGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCAT 101960 |||||| ||||| | | ||||| ||||| | ||||||| | || || ||| ||| Sbjct 212133 ATTTGG-GGAACGATTAGTTGCTTTTGCAACTATTGAAGGTGTATTTTTCTCTGGATCAT 212075 Query 101961 TCGCATCCATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATG 102020 | || |||| || ||| | || || || ||| | |||||||| | |||| || |||| Sbjct 212074 TTGCTGCCATATTTTGGTTGAAAAAGAGAGGTTTAATGCCTGGTTTAACCTTTTCTAATG 212015 Query 102021 AGTTCATTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCAT-------GCTG--T 102071 | | || | | | || |||||||| ||| || |||| ||| | ||| | Sbjct 212014 AACTTATCTGTCGAGATGAAGGTCTACATACAGATTTTGGATGTTTATTATTCGCTCACT 211955 Query 102072 TGAAAAAGGGTTTTGTTGATACCCCATCAAGAGAAAGGATTCTTGAAA-TTGTCACTGAA 102130 || |||| | ||| ||| || | | || |||| ||||||||||| Sbjct 211954 TGCAAAAT----------AAACCTGATCCAGCTATTG---TCGAGAAAATTGTCACTGAA 211908 Query 102131 GCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATG 102190 || || |||||| |||||| | || | | || ||||| |||| | || ||| Sbjct 211907 GCTGTTGTGATTGAAAAAGAATACTTTACCGAGGCTCTTCCTGTCTCATTACTTGGTATG 211848 Query 102191 AACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATG 102250 || ||| | |||||| | || |||||||||| ||| || |||| | | | |||| || Sbjct 211847 AATTGCGACTTGATGTGTCAATACATTGAATATGTTGCTGATAGATTGCTCGTTGCTTTG 211788 Query 102251 GGACTAGAAAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTC 102310 ||| ||||| ||| ||| ||| || || ||| || ||||| |||||||| || Sbjct 211787 GGAAATAAAAAGGTTTATGATGCTACAAATCCTTTCGACTTTATGGAAAATATTTCTCTT 211728 Query 102311 GAGAATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 | |||||| || || |||||||||||||| | || |||||| Sbjct 211727 GTTGGTAAGACTAATTTCTTTGAAAAGAGAGTTTCAGATTATCAA 211683 Score = 123 bits (136), Expect = 5e-23 Identities = 340/515 (66%), Gaps = 22/515 (4%) Strand=Plus/Plus Query 101852 ATCAAGAAGAAGGAGCAGTGGGCTATTAATTGGAT----GCAAAGCAATAACGATTTGGC 101907 || |||||||||| | |||||| | | ||||| | ||| || | ||||| | Sbjct 578091 ATTAAGAAGAAGGCAGATTGGGCTTTAAGATGGATTAGTGATAAGGAAGCATTATTTG-C 578149 Query 101908 GGAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATC 101967 |||| ||||||| || ||||| |||||||| || || || |||| | |||||||| Sbjct 578150 TGAACGTCTTGTTGCTTTCGCTGCTGTTGAAGGTATTTTTTTCTCTGGTTCTTTCGCATC 578209 Query 101968 CATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCAT 102027 ||||||||| | || || || ||| | |||| || || || | || ||||| || || Sbjct 578210 TATTTTCTGGTTAAAAAAGAGAGGTTTAATGCCAGGCCTTACTTTTTCTAATGAATTGAT 578269 Query 102028 TTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGT 102087 | | | || ||||||||||| || ||||| ||| | | || | ||| | Sbjct 578270 CTGTCGTGATGAAGGTCTTCACACTGATTTTGCTTGCTTATTATTTTCCCA---TTTGGA 578326 Query 102088 TGAT--ACCCCATCAAGAGAAAGGATTCTTGAA---ATTGTCACTGAAGCCGTCCGAATT 102142 || |||| ||| || ||| ||||| || | || || || || ||| Sbjct 578327 AAATAGACCCGATC-----CAATTATTGTTGAAAAGATAATTACAGAGGCTGTAACTATT 578381 Query 102143 GAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTG 102202 || | |||| | |||| | | || || | |||| | || ||||| ||||| ||| Sbjct 578382 GAGAAGGAATACTTTACAGATGCTCTTCCAGCCTCATTACTTGGTATGAATTGCAATTTG 578441 Query 102203 ATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAA 102260 ||| | || || |||||| ||| || ||| || || |||| | || || || | Sbjct 578442 ATGTGTCAATATGTTGAATATGTTGCCGATCGTCTTTTAGTTGCTCTAGGTAACAAG--A 578499 Query 102261 AGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGA 102320 || || |||||||| || || || |||||||| |||||||| | | ||||| Sbjct 578500 AGATTTACAATGTTACTAATCCATTTGACTTCATGGAGAATATTTCATTAGCTGGTAAGA 578559 Query 102321 CCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAA 102355 | |||||||| || |||||||| | || |||||| Sbjct 578560 CAAACTTTTTCGAGAAGAGAGTTTCTGATTATCAA 578594 >seq21 Length=453462 Score = 118 bits (130), Expect = 2e-21 Identities = 311/474 (66%), Gaps = 17/474 (4%) Strand=Plus/Plus Query 35392 AGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGA 35451 |||||| ||| |||| || ||||| || ||||||||| | |||||||||||| ||||| Sbjct 131117 AGAGGGTGATCTGGGTCCTGTATATGGCTTCCAATGGAGGCATTTTGGTGCTAAATATAC 131176 Query 35452 TACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGAC 35511 | ||| | | |||||||| || ||||| ||||||| || || | | | | | Sbjct 131177 AAATTGTGATGCGGATTATACAGGTCAGGGTGTTGATCAGTTAGCGGAAGTTATTTATAA 131236 Query 35512 CCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 | | | | || ||| ||||| |||| || ||| | | || ||||||||| |||| | Sbjct 131237 ATTAAAAAATAACCCATATGATCGAAGAATCATTTTATCTGCCTGGAATCCTGCGGATTT 131296 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT------------ 35619 | |||||||| || ||||| || ||| ||| ||||||||||| Sbjct 131297 TTCAAAAATGGCTCTGCCACCATGTCATATGTTTGCACAATTTTATGTTAACTTTCCAAA 131356 Query 35620 GGCT---AATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGG 35676 || | || ||| | || || ||||| || || | ||| | || || || Sbjct 131357 GGATAAGAAACCAGAGCTTTCTTGTGTTTTGTACCAAAGATCTTGCGATATGGGTTTAGG 131416 Query 35677 CGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC-CAGTATGGTGG 35735 || ||||| || ||||||||||| ||||| | || | |||| || || | || | Sbjct 131417 AGTCCCCTTTAACATTGCATCATATGCTCTTTTAACAAAAATGATTGCTCATGTTTGT-G 131475 Query 35736 GTCTAAAACCGGGAGAGTTTATCCTCACTCTTGGTGACGCACACATTTATAATACCCACA 35795 | | | || || ||||| | ||||||||| || |||||| ||||| | || Sbjct 131476 ATATGGAGTGTGGTGATTTTATTCACACTCTTGGAGATGCACACGTTTATTTAAATCATG 131535 Query 35796 TTGAGGTGTTAAAGAAGCAGTTGTGCCGCGTCCCTAGACCATTCCCTAAGTTGA 35849 |||| | |||||| | ||| | | || || || || ||| || ||||||| Sbjct 131536 TTGATGCTTTAAAGGAACAGATATCTCGAGTGCCAAGGGAATTTCCAAAGTTGA 131589 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989582275649880