Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq1 623 1e-173 seq14 255 5e-63 >seq1 Length=2214157 Score = 623 bits (690), Expect = 1e-173 Identities = 1262/1855 (68%), Gaps = 41/1855 (2%) Strand=Plus/Plus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||| ||| |||| ||||| | || || | || ||||| | |||||||||||||||| Sbjct 30727 TCAATTGTAAATTGTATAGCAGCAGAAGCAGCTTGAGTTCTTAAATAATACATTCCAGTT 30786 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | |||| || |||||||||||||| || | ||| | ||| ||| Sbjct 30787 TTTAAACCTTTTTTCCAGCCATAAAAATGCATACTTGTTAATTTCCCCATTGTTGGAGAT 30846 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | ||||| || | | ||||| |||||| ||||| ||| | | || || || | Sbjct 30847 TTAATATAAATATTAAGAGATTGTGATTGATCAATAAAAGCAGCACGATCAGCAGCTAAA 30906 Query 36970 TCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATCT 37029 || | ||| |||||| |||| |||||||| |||||||||| | ||| || || | | Sbjct 30907 TCAATAATTGTTTTTTGTGATAATTCCCAAACAGTTTTATATAAATCTTTAATTTTTTGT 30966 Query 37030 GGTA--AATCTAAATGTTG-AATAGAACCATTATGTAACACAATTGTATTCTTTATGTCA 37086 |||| ||| | ||| ||| || ||||||| | |||| || | || || | Sbjct 30967 GGTATCAATGGGATATTTGCAATTGATCCATTATCACTAATAATTTTACTTTTAATTGAA 31026 Query 37087 TTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAA 37146 | |||||| ||| | | | || ||| | |||| |||||| |||| ||||| Sbjct 31027 TCATTCCATATACCTAAATCAACTAAATCTTTTAATAACCATGGATTAACAATTTGAAAT 31086 Query 37147 TCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCATTA 37206 || || | ||| |||||||| |||| ||||| |||||||||||||| | |||||| Sbjct 31087 TCACCTGCTAAAACTCTTCTACTATAAATATTTGAAGTATATGGTTCAAAACATTCATTA 31146 Query 37207 TTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTTCTC 37266 | | ||||| ||||| ||||| || ||||||||||| | ||||| |||||| Sbjct 31147 AATCCAAGAATTTGTGATGTTGATGCTGTTGGCATTGGTGCAACAAGAAGTGAATTTCTT 31206 Query 37267 AATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGG--GT 37324 || |||| | | ||| | | ||| | | || ||||||||| | || ||||| | Sbjct 31207 AAACCATATTTTGACATTTTTTGTTTCAATAAATCCCAATCCCAAAGTTCAGTTGGTTGA 31266 Query 37325 TCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCT 37384 | || ||| | ||||||||||| |||||||| | | ||| || | | ||| || | Sbjct 31267 ACATT--CCATAAATCATATTGTAAAATACCTTGAGATGTTGGTGATCCTTCATAAGTTT 31324 Query 37385 CATAAGGTCCGTAAAT-TTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATT 37443 |||| ||||| ||| | ||| |||| ||| || | ||| | || |||| ||| || Sbjct 31325 CATATGGTCC-TAATTCTTTTGCTAATTCACATGATGCTTCAACAGCAGCATGATAAATA 31383 Query 37444 GTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAAT 37503 ||||| || ||||| || ||||||| ||| ||||| ||| |||| || | || Sbjct 31384 GTTTCAAATATTTGAATGTTTAATAATTTAGCTTCAGGTGAATCAAATG-GTAAACGAAG 31442 Query 37504 A-ATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATT 37562 | | ||||| ||||||| ||||| |||||||| | | | || ||||||||| || |||| Sbjct 31443 ACACATAAAAGCATCAGCTAAACCTTGAACACCTAAAGCAATTGGTCTATGTCTCATATT 31502 Query 37563 AGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTTT 37622 || | | ||| || |||||||||||||| |||| || |||||||||| ||| Sbjct 31503 TGAATTTCTTGCTTCAATAACTGGATAATAATTCCTATCAATAATTTTATTTAAATTACG 31562 Query 37623 AACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA---CATAAAT----ACGTTAT--- 37672 ||| | | ||| |||| ||| | || || | ||| |||||| ||||||| Sbjct 31563 AACAACAACTTTTGTAA-TATCATGAAGTTTTTGAAAATTATAAATTGAAACGTTATCTT 31621 Query 37673 ---TATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTT 37729 ||| || |||| | || | | ||| ||| ||| || |||||||||||||| Sbjct 31622 CAATATCAATAAATGTTGGTAATGCTAATGATGCTAAATTGCAAACAGCAACTTCATCGG 31681 Query 37730 CGTTACTAAATTGTATAATCTCTGTACAGAGATT---ACTCGATCTAATTGTTCCCAAAT 37786 | | ||| | ||| || ||| | ||| ||| | | ||||| || | || Sbjct 31682 GTGCAGAATATTCAACAATTTCACAACATAAATTTGAACT---TTTTATTGTACCAAGAT 31738 Query 37787 TGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTT 37846 | ||||||| |||||||||||| | ||||||||| || ||| | || | || || Sbjct 31739 TTTTTTGATTACTTTTTTTATTACATGCATCTTTATAAAGCATAAATGGAATACCAGTTT 31798 Query 37847 CTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTT--GCTTTAACGATCGCTTTA-- 37902 || |||| || || | ||| || | || ||| || || |||||| || | |||| Sbjct 31799 CTGTTTGTGCTTCCAAAATTGAATACC--AAAGTTTTTGAGCTTTA---ATTGTTTTAAC 31853 Query 37903 AtttttttCTT-TGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCATACATC 37961 | ||| ||| | |||| |||| | ||||||| | ||| |||| || | ||||| Sbjct 31854 AGCTTTACCTTCTTTTTCATATTTTTCATATAATGCTTCAAATTCATCACCATAAACATC 31913 Query 37962 GCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCG 38021 | | || || ||| ||| | | || ||||||| ||| || ||| || | Sbjct 31914 TGAAAGACCAGGGACTTCATTTGGGGAAAATAATGACCATTGACCATTTTGTTCAACTCT 31973 Query 38022 TTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTC 38081 | |||||||||||||| | ||||||||| | |||||||||| | | |||| |||||| Sbjct 31974 TCTCATAAATAAATCAGAAATCCATAATGCTGCAAATAAATCTCTTGCTCTAATTTCTTC 32033 Query 38082 GTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTAT 38141 || || ||| ||||| | | | |||| || | |||||| ||||||||||| | Sbjct 32034 TTTACCATGATTTTTTCTAATATCAATATAATCAAAAACATCAGCATGCCATGGTTCCAA 32093 Query 38142 ATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTT 38201 ||| || | | || || |||||||||| ||| || |||| || |||||| | || || Sbjct 32094 ATACATTGCAAAAGCACCAGGTCTTTTATTACCACCTTGATCAACATATCTTGCAGTATT 32153 Query 38202 ATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGATATATA 38261 ||| | | | |||||| || | |||||||||||| | || ||| |||| | ||||| Sbjct 32154 GTTAAAAACACGTAACATTGGAATAATACCATTAGATGTACCATTTGTACCTGCAATATA 32213 Query 38262 AGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTTTTGATAT 38321 || ||| || || |||||| || | || ||||| || || |||||| || Sbjct 32214 AGAACCAGTACTTCTAATATTATGAATATGAAGACCAATTCCTCCAGCTGATTTTGAAAT 32273 Query 38322 TAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTATTGGTAG 38381 |||||| || |||||| |||||| | |||||||| || || || || || | | Sbjct 32274 TAAAGCACAAGTTTTTAAAGTATCATAAATACCTTCAATTGAATCTTCTTTCATAGCAAT 32333 Query 38382 TATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGC 38441 | ||||||| ||||||||| || ||||| || || |||||||| || ||||| || Sbjct 32334 AAGAAAACAAGAAGACATTTGTGGTTGAGGAGTACCAGCATTAAATAAAGTGGGAGAAGC 32393 Query 38442 ATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACC 38501 ||| |||| ||||| |||| ||||||| ||||| || || | || |||||| | Sbjct 32394 ATGAGTGAAATATTTTAATGACATTAAATTATAGGTTTCAATGACTTTTTCAATATCATC 32453 Query 38502 GCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATTATTTTATT 38561 || |||||||| | || || ||||| | | ||||||||||||||| | |||| Sbjct 32454 ACCATGAATACCAACAGCAACTCTCATAATTAAATGTTGTGGTCTTTCAGCAACTTTACC 32513 Query 38562 ATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACTATAT 38616 || || | | || || ||| |||| | ||||| | ||||| || ||||| Sbjct 32514 ATCAAGTCTTAAAAGGTATGATCTTTCAAGAGTTTTAAAACCAAAGAAATTATAT 32568 >seq14 Length=670130 Score = 255 bits (282), Expect = 5e-63 Identities = 592/880 (67%), Gaps = 28/880 (3%) Strand=Plus/Minus Query 11339 TTTTGATATTCACTAACTCGTCGT-TCGAAAAAATTAGTCTTACCTTCTAGTGATATATA 11397 |||||||| ||| ||||| || | |||||||| || |||||||| ||| ||| |||| Sbjct 578596 TTTTGATAATCAGAAACTC-TCTTCTCGAAAAAGTTTGTCTTACCAGCTAATGAAATATT 578538 Query 11398 CTCCATAAAGCTAAAAGGATTATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAA 11457 |||||| ||| ||| |||||| |||||| | | || | ||||| | ||| Sbjct 578537 CTCCATGAAGTCAAATGGATTAGTAACATTGTAAATCTTCTTGTTACCTAGAGCAACTAA 578478 Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTA-TAA 11516 | | ||| || || |||| | ||| ||| |||| ||| ||||||||||| | ||| Sbjct 578477 AAGACGATCGGCAACATATTCAACATATTGACACATCAAATTGCAATTCATACCAAGTAA 578418 Query 11517 -GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGATT 11575 || | |||| |||| |||| || | ||||| || ||| | || || || | ||| Sbjct 578417 TGAGGCT--GGAAGAGCATCTGTAAAGTATTCCTTCTCAATAGTTACAGCCTCTGTAATT 578360 Query 11576 ATCGACGTTATAACT-TCCTTAGAT--GGTGGATGTAATAAATGTTTAAACATTAAACAC 11632 ||| || ||| | || ||| ||| || | ||||| ||| | ||| || Sbjct 578359 ATCT---TTTCAACAATAATTGGATCGGGTCTATTTTCCAAATGGGAAAATAATAAGCAA 578303 Query 11633 GCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCG 11692 ||||||||| || | |||||| || | || || | |||||||||||| || | || Sbjct 578302 GCAAAATCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAAGTAAGGCCT 578243 Query 11693 GGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATT 11752 ||||| || |||| ||||||| ||| || |||| || || |||||||| || || || Sbjct 578242 GGCATTAAACCTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAGAAAAAAATA 578183 Query 11753 CCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA------CCTTGTTGCTAGAT 11806 || || ||||| || || || || | | ||| || ||| |||| | ||| Sbjct 578182 CCTTCAACAGCAGCGAAAGCAACAAGACGTTCAGCAAATAATGCTTCCTTATCACTA--- 578126 Query 11807 ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTA 11866 |||||| || |||||||| || ||||| || | || | |||| ||||| || Sbjct 578125 ATCCATCTTAAAGCCCAATCTGCCTTCTTCTTAATACAAGGAACATTTTCAATAGCATTG 578066 Query 11867 AAT--AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 ||| |||| || ||| || |||| | | |||||| || ||||||| ||| Sbjct 578065 AATAAAAATTCA--CGCTCTTTAGAATCTTTAATATATGTGTCAATTAATAGTGAATATG 578008 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | || || || ||||||||||| ||||| || ||||| || || || |||| Sbjct 578007 TCTCAGAGTGTATATTTTCCATCATGATTTGGAAACCATAAAAGCACTTAGCTTCTGGTG 577948 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 || || || | |||| |||| ||||||| || || ||||||||||| || | Sbjct 577947 TTTGAACCTCAGCCGAAAAGTTTTCAACTAAATTTTCGTTAACAATACCATCTGAAGCAG 577888 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCCC 12101 | ||||| |||| | || ||||| | || |||||| | | ||| |||| Sbjct 577887 CGAAAAAGGCTAAGACGCGTGAAATAAAAAAACGCTCATCTTTATTAAGCTTATTTTCCC 577828 Query 12102 AATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATT 12161 ||||| | | |||||| |||||| | ||||||| | ||||| ||| ||| | | | Sbjct 577827 AATCACCAATATCTTTACTTAAATCAATTTCTTCAGCAGTCCAGAAAGATGCTTCAGCCT 577768 Query 12162 GTTTATACATTTTCCAGATATCATGATACTTAATAGGGAA 12201 ||||||||||| |||||| || || ||||||| ||||| Sbjct 577767 TTTTATACATTTGCCAGATCTCGTGGAACTTAATTGGGAA 577728 Score = 226 bits (250), Expect = 3e-54 Identities = 596/894 (67%), Gaps = 28/894 (3%) Strand=Plus/Plus Query 11337 TCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATAT 11396 |||||||||| || ||||| ||| || |||||||||||||| | || || |||| Sbjct 211679 TCTTTTGATAATCTGAAACTCTCTTTTCAAAGAAATTAGTCTTACCAACAAGAGAAATAT 211738 Query 11397 ACTCCATAAAGCTAAAAGGATTATATA-CATTGAAGACTTTTTCACAACCTAACTCTGTT 11455 ||||||||| |||||||| | || ||| | || |||| | || || | Sbjct 211739 TTTCCATAAAGTCGAAAGGATT-TGTAGCATCATAAACCTTTTTATTTCCCAAAGCAACG 211797 Query 11456 AATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTA-T 11514 | |||||||| || || |||| || || ||| |||| || ||||||||||| | | Sbjct 211798 AGCAATCTATCAGCAACATATTCAATGTATTGACACATCAAGTCGCAATTCATACCAAGT 211857 Query 11515 AA-GATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCAATGA 11573 || || || |||| ||| | || || | || ||||| || ||| || ||| ||| Sbjct 211858 AATGAGACA--GGAAGAGCCTCGGTAAAGTATTCTTTTTCAATCACAACAGCTTCAGTGA 211915 Query 11574 -----TTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAA 11628 || ||||| ||| || | || || || | || || || | ||| Sbjct 211916 CAATTTTCTCGACA--ATAGCTGGATCAG---GTTTATTTTGCAAGTGAGCGAATAATAA 211970 Query 11629 ACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAA 11688 ||| ||||||| ||||| |||||| |||| || || |||||||||||||| ||||| Sbjct 211971 ACATCCAAAATCTGTATGTAGACCTTCATCTCGACAGATAAGTTCATTAGAAAAGGTTAA 212030 Query 11689 TCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAA 11748 || ||||| || |||| ||||| | ||||||||| ||||||||||| ||||| || || Sbjct 212031 ACCAGGCATTAAACCTCTCTTTTTCAACCAAAATATGGCAGCAAATGATCCAGAGAAAAA 212090 Query 11749 TATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATA--CCTTGTTGCTAGAT 11806 || || || | || |||||| || |||| || ||| ||| ||| ||| | | | | Sbjct 212091 TACACCTTCAATAGTTGCAAAAGCAACTAATCGTTCCCCAAATAATGCTTCATCGTCGTT 212150 Query 11807 -ATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||||| | ||| ||||| |||| ||| | ||| || | | || || || Sbjct 212151 AATCCATTTCAAAGTCCAGTCAGCCTTCTGTTTGATACATGGGATGTTGACAATTGCATT 212210 Query 11866 A--AATAAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATAC 11923 | || ||| | |||||| ||| ||||| | || ||||||| || | || Sbjct 212211 AAGAAGAAAGTC--TTTTTCAATAGGGTCTCTAATGTAAGTATCTAACTGTACAGAGTAA 212268 Query 11924 ATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAA 11983 |||| ||||| |||||||| | || || || |||||||||| | || || | | Sbjct 212269 GTTTCAGAATGTATATTTTCTGTCATGATCTGGAACCCATAGAAACTTTTGGCTTCAGGA 212328 Query 11984 CACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGAT 12043 || || || | |||| | || ||||||| ||||| |||| ||||||| | | Sbjct 212329 ATTTGAACCTCTGCTGAAAAGTTCTCAACTAAATTTTCATTAACAAGACCATCAGATGCT 212388 Query 12044 GCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTA---TCC 12100 |||||||| || | || | |||||| || | || | || |||| ||| ||| Sbjct 212389 GCAAAAAAAGCCAATACTCTTGAGATAAAGAATCTCTCATTTTCGTTTAACTTAGTGTCC 212448 Query 12101 CAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCAC-TGA 12159 || ||| || ||| || | | ||| | ||| || ||||| || ||| | || Sbjct 212449 CAGTCAGGTATATCCTTAGCAAGATCAATTTCCTCTGTAGTCCAGAAGGAAGCCTCGTGC 212508 Query 12160 TTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAACCT 12213 || || ||||||| ||| || ||| ||| ||||| || || ||||| || || Sbjct 212509 TT-CTTGTACATTTGCCAAATTTCACCATATTTAATTGGAAACATAACAAATCT 212561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524003507840