Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5 89.7 5e-13 seq21 86.0 6e-12 >seq5 Length=1301127 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | |||||| ||||| | || ||||| ||||| ||||||||||| Sbjct 1173646 CCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGAT 1173705 Query 143018 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | || | ||||| | ||| ||||||||| |||| | |||||| || || ||||| Sbjct 1173706 AAAGTACGTCCA-TCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGG 1173764 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || ||| || | | || | || || | | ||||| Sbjct 1173765 GATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGATGACTCTAC 1173824 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| | ||||| || || || ||||| Sbjct 1173825 CTCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCAT 1173872 >seq21 Length=453462 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||| | ||||| || || | ||||| || ||||| ||||||||||| Sbjct 371750 CCACCTCTTAATCTTAAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAATCAGAT 371691 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | ||||| ||||||||||||||| | || | |||||| ||||| || || Sbjct 371690 AAAGTACGACCATCTTCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGGGGA 371631 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || ||| ||| | | || | || || ||| ||| || Sbjct 371630 ATTCCTTCCTTGTCTTGGATCTTTGATTTAACATTATCGATTGTATCACTGGATTCGACC 371571 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | || || || || | || || || || || ||||| Sbjct 371570 TCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGACAAAAATCTGCAT 371524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507013538075520