Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03-
01] 136 sequences; 24,815,695 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq14 212 5e-50
>seq14
Length=670130
Score = 212 bits (234), Expect = 5e-50
Identities = 596/903 (66%), Gaps = 13/903 (1%)
Strand=Plus/Plus
Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902
||| ||||||| | |||||||| || |||||| |||||||| || || || || |
Sbjct 211664 TTGCCATAACACCTGTCTTTTGATAATCTGAAACTCTCTTTTCAAAGAAATTAGTCTTAC 211723
Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC 12962
| | | ||||||||||||||||| |||||||||||| | | | ||| ||||||
Sbjct 211724 CAACAAGAGAAATATTTTCCATAAAGTCGAAAGGATTTGTAGCATCATAAACCTTTTTAT 211783
Query 12963 ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC 13022
|| || | | | |||||| ||||||||| | || ||||| || ||| || || |
Sbjct 211784 TTCCCAAAGCAACGAGCAATCTATCAGCAACATATTCAATGTATTGACACATCAAGTCGC 211843
Query 13023 AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAA 13082
| ||||| || | |||| ||||| | ||| || || || | | |||||| || |||
Sbjct 211844 AATTCATACCAAGTAATGAGACAGGAAGAGCCTCGGTAAAGTATTCTTTTTCAATCACAA 211903
Query 13083 CTGCTTCGATAACTA-TGTCTC-TTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140
| ||||| | || | | |||| | || | | | | || |||| | ||
Sbjct 211904 CAGCTTCAGTGACAATTTTCTCGACAATA-GCTGGATCA-GGTTTATTTTGCAAGTGAGC 211961
Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200
|| | | |||| ||||||| || | |||||||||| || || || || || ||
Sbjct 211962 GAATAATAAACATCCAAAATCTGTATGTAGACCTTCATCTCGACAGATAAGTTCATTAGA 212021
Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260
||| |||| ||| ||||| | |||| ||||| | ||||||||| |||||||| || ||
Sbjct 212022 AAAGGTTAAACCAGGCATTAAACCTCTCTTTTTCAACCAAAATATGGCAGCAAATGATCC 212081
Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT-AT 13319
|| ||||||| ||||||| | |||||| || | || | ||| ||| | || | |
Sbjct 212082 AGAGAAAAATACACCTTCAATAGTTGCAAAAGCAACTAATCGTTCCCCAAA--TAATGCT 212139
Query 13320 TTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378
| | || | ||||| || | ||||| || || ||||| | || || ||
Sbjct 212140 TCATCGTCGTTAATCCATTTCAAAGTCCAGTCAGCCTTCTGTTTGATACATGGGATGTTG 212199
Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438
| ||||| |||| | | | | |||||| || |||| ||| |||||||||| | |
Sbjct 212200 ACAATTGCATTAAGAAGAAAGTCTTTTTCAATAGGGTCTCTAATGTAAGTATCTAACTGT 212259
Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498
| || |||| ||||| |||||||| || || ||||| ||||| |||| | |
Sbjct 212260 ACAGAGTAAGTTTCAGAATGTATATTTTCTGTCATGATCTGGAACCCATAGAAACTTTTG 212319
Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558
|| || | | ||||| || | |||| | || |||| ||||| ||||| | ||
Sbjct 212320 GCTTCAGGAATTTGAACCTCTGCTGAAAAGTTCTCAACTAAATTTTCATTAACAAGACCA 212379
Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTA-ATAAAttttttttCGTTTTCTGACAA 13617
||| || ||||||||||| | || | | | ||||| | | || ||||| ||
Sbjct 212380 TCAGATGCTGCAAAAAAAGCCAATA-CTCTTGAGATAAAGAATCTCTCATTTTCGTTTAA 212438
Query 13618 CT---TTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674
|| | ||| || || | ||| || | | ||| | ||||| ||||| || ||
Sbjct 212439 CTTAGTGTCCCAGTCAGGTATATCCTTAGCAAGATCAATTTCCTCTGTAGTCCAGAAGGA 212498
Query 13675 AGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTA 13734
||| | |||||| ||||| ||| || || ||| ||| ||||||| ||| |
Sbjct 212499 AGCCTCGTGCTTCTTGTACATTTGCCAAATTTCACCATATTTAATTGGAAACATAACAAA 212558
Query 13735 TCT 13737
|||
Sbjct 212559 TCT 212561
Score = 178 bits (196), Expect = 1e-39
Identities = 586/898 (65%), Gaps = 35/898 (4%)
Strand=Plus/Minus
Query 12820 AGAAAATACATCATCGTCCTTATT------TGACATAACAGACATTTTTTGATATTCGCT 12873
|||| | ||| ||| ||||||| || ||||||| ||||||||| ||
Sbjct 578642 AGAATCTTCATTATCTGCCTTATTAACACCTGCCATAACACCGGCTTTTTGATAATCAGA 578583
Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933
|||||| || || ||||||||||| || || |||| |||||||| ||||| || || ||
Sbjct 578582 AACTCTCTTCTCGAAAAAGTTTGTCTTACCAGCTAATGAAATATTCTCCATGAAGTCAAA 578523
Query 12934 AGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGTAACAATCTGTCAGC 12990
||||| | |||| | ||| || || |||| | | ||| | | || ||
Sbjct 578522 TGGATTAGT--AACATT-GTAAATCTTCTTGTTACCTAGAGCAACTAAAAGACGATCGGC 578466
Query 12991 AACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCAT 13050
|||| | || | || || ||| |||| || ||||| || | |||| | || |
Sbjct 578465 AACATATTCAACATATTGACACATCAAATTGCAATTCATACCAAGTAATGAGGCTGGAAG 578406
Query 13051 AGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTAC 13110
||| ||||| || | | || || ||| || || || ||| ||| ||| | |
Sbjct 578405 AGCATCTGTAAAGTATTCCTTCTCAATAGTTACAGCCTCTGTAATTAT----CTTTTCAA 578350
Query 13111 GTTCTCTAAT-GGA---GG---ATTTGATAGATGCTTAAACATCATACATGCAAAATCAC 13163
| |||| ||| || |||| | ||| ||| | | || |||||||||
Sbjct 578349 ---CAATAATTGGATCGGGTCTATTTTCCAAATGGGAAAATAATAAGCAAGCAAAATCAG 578293
Query 13164 AGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223
||| | |||||||| | || || | || || ||||| || || || ||||| | |
Sbjct 578292 TGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAAGTAAGGCCTGGCATTAAAC 578233
Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTG 13283
||| ||||| | ||| || |||| || || ||||| || ||||| || |||||||| |
Sbjct 578232 CTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAGAAAAAAATACCTTCAACAG 578173
Query 13284 CTGCAAACGCTATCAACCTTTCACCATACGTACTATTT--TTACTCTCTA-TCCACTTTC 13340
| || || || | | | |||| || | || | || ||| || ||| |||| ||
Sbjct 578172 CAGCGAAAGCAACAAGACGTTCAGCAAA--TAATGCTTCCTTA-TCACTAATCCATCTTA 578116
Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400
||||| | ||| || | |||| || | |||||| || || || |||||| | |
Sbjct 578115 AAGCCCAATCTGCCTTCTTCTTAATACAAGGAACATTTTCAATAGCATTGAATAAAAATT 578056
Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460
|| ||| ||| |||||| || || || |||| ||| | || || || |
Sbjct 578055 CACGCTCTTTAGAATCTTTAATATATGTGTCAATTAATAGTGAATATGTCTCAGAGTGTA 577996
Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520
||||||||||| ||||||||||||||||| || |||| |||| | ||||| || |
Sbjct 577995 TATTTTCCATCATGATTTGGAAACCATAAAAGCACTTAGCTTCTGGTGTTTGAACCTCAG 577936
Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580
|||| |||| |||| ||||||||||| || || || |||||| ||||| || |
Sbjct 577935 CCGAAAAGTTTTCAACTAAATTTTCGTTAACAATACCATCTGAAGCAGCGAAAAAGGCTA 577876
Query 13581 GTATGTGCTTAATAAAttttttttCGT-TTTCTGA--CAACTTTAACCAATCTGGAAAAT 13637
| | | |||||| || | ||| | | | ||| |||||| || ||
Sbjct 577875 AGACGCGTGAAATAAAAAAACGCTCATCTTTATTAAGCTTATTTTCCCAATCACCAATAT 577816
Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695
|||| |||||| | || ||| | ||||| ||||| || ||||||| ||||||||
Sbjct 577815 CTTTACTTAAATCAATTTCTTCAGCAGTCCAGAAAGATGCTTCAGCCTTTTTATACAT 577758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430981685646672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |