Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq14 212 5e-50 >seq14 Length=670130 Score = 212 bits (234), Expect = 5e-50 Identities = 596/903 (66%), Gaps = 13/903 (1%) Strand=Plus/Plus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||| ||||||| | |||||||| || |||||| |||||||| || || || || | Sbjct 211664 TTGCCATAACACCTGTCTTTTGATAATCTGAAACTCTCTTTTCAAAGAAATTAGTCTTAC 211723 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTAC 12962 | | | ||||||||||||||||| |||||||||||| | | | ||| |||||| Sbjct 211724 CAACAAGAGAAATATTTTCCATAAAGTCGAAAGGATTTGTAGCATCATAAACCTTTTTAT 211783 Query 12963 ACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC 13022 || || | | | |||||| ||||||||| | || ||||| || ||| || || | Sbjct 211784 TTCCCAAAGCAACGAGCAATCTATCAGCAACATATTCAATGTATTGACACATCAAGTCGC 211843 Query 13023 AGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAA 13082 | ||||| || | |||| ||||| | ||| || || || | | |||||| || ||| Sbjct 211844 AATTCATACCAAGTAATGAGACAGGAAGAGCCTCGGTAAAGTATTCTTTTTCAATCACAA 211903 Query 13083 CTGCTTCGATAACTA-TGTCTC-TTATTACGTTCTCTAATGGAGGATTTGATAGATGCTT 13140 | ||||| | || | | |||| | || | | | | || |||| | || Sbjct 211904 CAGCTTCAGTGACAATTTTCTCGACAATA-GCTGGATCA-GGTTTATTTTGCAAGTGAGC 211961 Query 13141 AAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGA 13200 || | | |||| ||||||| || | |||||||||| || || || || || || Sbjct 211962 GAATAATAAACATCCAAAATCTGTATGTAGACCTTCATCTCGACAGATAAGTTCATTAGA 212021 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 ||| |||| ||| ||||| | |||| ||||| | ||||||||| |||||||| || || Sbjct 212022 AAAGGTTAAACCAGGCATTAAACCTCTCTTTTTCAACCAAAATATGGCAGCAAATGATCC 212081 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACT-AT 13319 || ||||||| ||||||| | |||||| || | || | ||| ||| | || | | Sbjct 212082 AGAGAAAAATACACCTTCAATAGTTGCAAAAGCAACTAATCGTTCCCCAAA--TAATGCT 212139 Query 13320 TTTTACTC-TCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTT 13378 | | || | ||||| || | ||||| || || ||||| | || || || Sbjct 212140 TCATCGTCGTTAATCCATTTCAAAGTCCAGTCAGCCTTCTGTTTGATACATGGGATGTTG 212199 Query 13379 TCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 | ||||| |||| | | | | |||||| || |||| ||| |||||||||| | | Sbjct 212200 ACAATTGCATTAAGAAGAAAGTCTTTTTCAATAGGGTCTCTAATGTAAGTATCTAACTGT 212259 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | || |||| ||||| |||||||| || || ||||| ||||| |||| | | Sbjct 212260 ACAGAGTAAGTTTCAGAATGTATATTTTCTGTCATGATCTGGAACCCATAGAAACTTTTG 212319 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 || || | | ||||| || | |||| | || |||| ||||| ||||| | || Sbjct 212320 GCTTCAGGAATTTGAACCTCTGCTGAAAAGTTCTCAACTAAATTTTCATTAACAAGACCA 212379 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTGCTTA-ATAAAttttttttCGTTTTCTGACAA 13617 ||| || ||||||||||| | || | | | ||||| | | || ||||| || Sbjct 212380 TCAGATGCTGCAAAAAAAGCCAATA-CTCTTGAGATAAAGAATCTCTCATTTTCGTTTAA 212438 Query 13618 CT---TTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 || | ||| || || | ||| || | | ||| | ||||| ||||| || || Sbjct 212439 CTTAGTGTCCCAGTCAGGTATATCCTTAGCAAGATCAATTTCCTCTGTAGTCCAGAAGGA 212498 Query 13675 AGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACGTA 13734 ||| | |||||| ||||| ||| || || ||| ||| ||||||| ||| | Sbjct 212499 AGCCTCGTGCTTCTTGTACATTTGCCAAATTTCACCATATTTAATTGGAAACATAACAAA 212558 Query 13735 TCT 13737 ||| Sbjct 212559 TCT 212561 Score = 178 bits (196), Expect = 1e-39 Identities = 586/898 (65%), Gaps = 35/898 (4%) Strand=Plus/Minus Query 12820 AGAAAATACATCATCGTCCTTATT------TGACATAACAGACATTTTTTGATATTCGCT 12873 |||| | ||| ||| ||||||| || ||||||| ||||||||| || Sbjct 578642 AGAATCTTCATTATCTGCCTTATTAACACCTGCCATAACACCGGCTTTTTGATAATCAGA 578583 Query 12874 AACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCCATAAAATCGAA 12933 |||||| || || ||||||||||| || || |||| |||||||| ||||| || || || Sbjct 578582 AACTCTCTTCTCGAAAAAGTTTGTCTTACCAGCTAATGAAATATTCTCCATGAAGTCAAA 578523 Query 12934 AGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGTAACAATCTGTCAGC 12990 ||||| | |||| | ||| || || |||| | | ||| | | || || Sbjct 578522 TGGATTAGT--AACATT-GTAAATCTTCTTGTTACCTAGAGCAACTAAAAGACGATCGGC 578466 Query 12991 AACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCAT 13050 |||| | || | || || ||| |||| || ||||| || | |||| | || | Sbjct 578465 AACATATTCAACATATTGACACATCAAATTGCAATTCATACCAAGTAATGAGGCTGGAAG 578406 Query 13051 AGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTAC 13110 ||| ||||| || | | || || ||| || || || ||| ||| ||| | | Sbjct 578405 AGCATCTGTAAAGTATTCCTTCTCAATAGTTACAGCCTCTGTAATTAT----CTTTTCAA 578350 Query 13111 GTTCTCTAAT-GGA---GG---ATTTGATAGATGCTTAAACATCATACATGCAAAATCAC 13163 | |||| ||| || |||| | ||| ||| | | || ||||||||| Sbjct 578349 ---CAATAATTGGATCGGGTCTATTTTCCAAATGGGAAAATAATAAGCAAGCAAAATCAG 578293 Query 13164 AGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCC 13223 ||| | |||||||| | || || | || || ||||| || || || ||||| | | Sbjct 578292 TGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAAGTAAGGCCTGGCATTAAAC 578233 Query 13224 CTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTG 13283 ||| ||||| | ||| || |||| || || ||||| || ||||| || |||||||| | Sbjct 578232 CTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAGAAAAAAATACCTTCAACAG 578173 Query 13284 CTGCAAACGCTATCAACCTTTCACCATACGTACTATTT--TTACTCTCTA-TCCACTTTC 13340 | || || || | | | |||| || | || | || ||| || ||| |||| || Sbjct 578172 CAGCGAAAGCAACAAGACGTTCAGCAAA--TAATGCTTCCTTA-TCACTAATCCATCTTA 578116 Query 13341 TGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAt 13400 ||||| | ||| || | |||| || | |||||| || || || |||||| | | Sbjct 578115 AAGCCCAATCTGCCTTCTTCTTAATACAAGGAACATTTTCAATAGCATTGAATAAAAATT 578056 Query 13401 ttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAA 13460 || ||| ||| |||||| || || || |||| ||| | || || || | Sbjct 578055 CACGCTCTTTAGAATCTTTAATATATGTGTCAATTAATAGTGAATATGTCTCAGAGTGTA 577996 Query 13461 TATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGG 13520 ||||||||||| ||||||||||||||||| || |||| |||| | ||||| || | Sbjct 577995 TATTTTCCATCATGATTTGGAAACCATAAAAGCACTTAGCTTCTGGTGTTTGAACCTCAG 577936 Query 13521 AGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAA 13580 |||| |||| |||| ||||||||||| || || || |||||| ||||| || | Sbjct 577935 CCGAAAAGTTTTCAACTAAATTTTCGTTAACAATACCATCTGAAGCAGCGAAAAAGGCTA 577876 Query 13581 GTATGTGCTTAATAAAttttttttCGT-TTTCTGA--CAACTTTAACCAATCTGGAAAAT 13637 | | | |||||| || | ||| | | | ||| |||||| || || Sbjct 577875 AGACGCGTGAAATAAAAAAACGCTCATCTTTATTAAGCTTATTTTCCCAATCACCAATAT 577816 Query 13638 CTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACAT 13695 |||| |||||| | || ||| | ||||| ||||| || ||||||| |||||||| Sbjct 577815 CTTTACTTAAATCAATTTCTTCAGCAGTCCAGAAAGATGCTTCAGCCTTTTTATACAT 577758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430981685646672