Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq14 257 4e-63 seq5 174 4e-38 seq21 167 5e-36 seq12 158 3e-33 >seq14 Length=670130 Score = 257 bits (284), Expect = 4e-63 Identities = 615/910 (68%), Gaps = 35/910 (4%) Strand=Plus/Minus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| || |||||||| | ||||||| || ||| |||||||| || || Sbjct 212561 AGATTTGTTATGTTTCCAATTAAATATGGTGAAATTTGGCAAATGTACAAGAAGCACGAG 212502 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 ||||| || |||||| ||| ||| | ||||| || | || || || ||| | | | Sbjct 212501 GCTTCCTTCTGGACTACAGAGGAAATTGATCTTGCTAAGGATATACCTGACTGGGACACT 212442 Query 268820 T--TAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875 | |||| | || || ||| ||||| || | | | ||| | |||||||||| Sbjct 212441 AAGTTAAACGAAAATGAGAGATTCTTTATCTCA-AGAGTATTGGCTTTTTTTGCAGCATC 212383 Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935 ||||||| | ||||| |||||| |||| ||||| || | |||||| || |||||||| Sbjct 212382 TGATGGTCTTGTTAATGAAAATTTAGTTGAGAACTTTTCAGCAGAGGTTCAAATTCCTGA 212323 Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995 ||||| | |||| || || |||||||| | ||||||||| ||||| || | ||| Sbjct 212322 AGCCAAAAGTTTCTATGGGTTCCAGATCATGACAGAAAATATACATTCTGAAACTTACTC 212263 Query 268996 TCTATTAATAGATACTTATAT-AGATGATAACAACGAAAAGAAAAGACTATTTTCTT--- 269051 | || |||||||||| || ||| || | ||||| ||||| | ||||| Sbjct 212262 TGTACAGTTAGATACTTACATTAGA-GACCCTATTGAAAA----AGACTTTCTTCTTAAT 212208 Query 269052 -CTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109 | || | ||| || ||| | | | | || |||| ||| || |||||||||| || Sbjct 212207 GCAATTGTCAAC-ATCCCATGTATCAAACAGAAGGCTGACTGGACTTTGAAATGGATTAA 212149 Query 269110 CGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166 ||| | || ||| || ||| | |||||||||||||| || | |||||| |||| Sbjct 212148 CGACGATGAAGCATTATTTGGGGAACGATTAGTTGCTTTTGCAACTATTGAAGGTGTATT 212089 Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226 || || || || ||||| || || ||||||||||| || ||||| | ||||| || || Sbjct 212088 TTTCTCTGGATCATTTGCTGCCATATTTTGGTTGAAAAAGAGAGGTTTAATGCCTGGTTT 212029 Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286 ||| || ||||| ||| | || | | || |||||| |||| || || | ||||| Sbjct 212028 AACCTTTTCTAATGAACTTATCTGTCGAGATGAAGGTCTACATACAGATTTTGGATGTTT 211969 Query 269287 ATTATTTACTAATTATCTTTC-ACACAAACCTTCTCAAGATAGAGTATACGAAATTATAG 269345 |||||| || | ||| | | | |||||| || || || || | ||||| | Sbjct 211968 ATTATTCGCTCA----CTTGCAAAATAAACCTGATCCAGCTATTGTCGAGAAAATTGTCA 211913 Query 269346 ATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATC-TTA-T 269403 | ||||||| | |||| ||||| | || || ||||| || || || ||| | Sbjct 211912 CTGAAGCTGTTGTGATTGAAAAAGAATACTTTACCGAGGCTCTTCCTGTC--TCATTACT 211855 Query 269404 CGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGT 269463 ||||||||| || | | |||| |||| ||| | | || ||||||||||||| || Sbjct 211854 TGGTATGAATTGCGACTTGATGTGTCAATACATTGAATATGTTGCTGATAGATTGCTCGT 211795 Query 269464 GTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAA 269520 |||| || | |||||| ||| | | | |||||| || |||||||| || Sbjct 211794 TGCTTTGGG---AAATAAAAAGGTTTATGATGCTACAAATCCTTTCGACTTTATGGAAAA 211738 Query 269521 TATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAAT 269580 ||| || | | |||||| |||||||||| || ||| | || | ||||| || | Sbjct 211737 TATTTCTCTTGTTGGTAAGACTAATTTCTTTGAAAAGAGAGTTTCAGATTATCAAAAGAC 211678 Query 269581 GGGTGTAATG 269590 ||||| ||| Sbjct 211677 AGGTGTTATG 211668 >seq5 Length=1301127 Score = 174 bits (192), Expect = 4e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | |||||| || ||||| || || || || || |||||| Sbjct 1173646 CCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGAT 1173705 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| | || ||||||| ||| || |||||||| |||| | ||||| || ||||| Sbjct 1173706 AAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGGG 1173765 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 |||||||| || ||||| ||||||| || ||||| || | |||||| | |||||| Sbjct 1173766 ATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGATGACTCTACC 1173825 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || |||||||||||||| ||||| ||||| ||||| |||||||| ||| Sbjct 1173826 TCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCATCTTG 1173876 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 165141 TTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAA 165200 ||||||||||||| | | || |||||||||||| | || || || || ||| | |||| Sbjct 281383 TTTTACATATAGAATTGAAAAAATGGGCAGATATTTTTTTAATTGCTCCATTATCTGCAA 281324 Query 165201 ACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAG 165260 | | ||| || || || || || ||| | ||| |||| || ||||| ||||||||||| Sbjct 281323 ATACTTTGGCTAAAATTGCAAATGGTCTATGTGATAATTTATTAACTAATATAGTTAGAG 281264 Query 165261 CGTGGAAT 165268 | |||||| Sbjct 281263 CCTGGAAT 281256 >seq21 Length=453462 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | ||||| ||||| || || || || || || ||| Sbjct 371753 ATACCACCTCTTAATCTTAAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAATCA 371694 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||| | ||| |||||||||||||| ||||||||||||| | |||||||| || Sbjct 371693 GATAAAGTACGACCATCTTCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGG 371634 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || |||||||| || || || ||||||| ||| ||||| || | ||||| || | ||| Sbjct 371633 GGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACATTATCGATTGTATCACTGGATTCG 371574 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || || ||||| || || || || ||||| |||||||| Sbjct 371573 ACCTCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGACAAAAATCTGCAT 371524 >seq12 Length=712717 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| | || || || | |||||| || ||||| || || || || ||||||||| Sbjct 150925 CCACCTCTCAATCTGAGAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAGTCAGAT 150984 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | || | || ||||| | ||| || ||||||||||| | | |||||||| ||||| Sbjct 150985 AAGGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 151044 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512 ||||| || ||||| |||||||||| ||| ||||| || | || || | || ||| Sbjct 151045 ATTCCCTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGACTCAACC 151104 Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 || || ||||| ||||| || ||||| ||||| ||||| ||||||||||| Sbjct 151105 TCAAGAGTAATTGTCTTCCCTGTAAGGGTTTTAACAAAAATCTGCATTTT 151154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396393688288