Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03-
01] 136 sequences; 24,815,695 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq14 257 4e-63
seq5 174 4e-38
seq21 167 5e-36
seq12 158 3e-33
>seq14
Length=670130
Score = 257 bits (284), Expect = 4e-63
Identities = 615/910 (68%), Gaps = 35/910 (4%)
Strand=Plus/Minus
Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759
|||||||| || |||||||| | ||||||| || ||| |||||||| || ||
Sbjct 212561 AGATTTGTTATGTTTCCAATTAAATATGGTGAAATTTGGCAAATGTACAAGAAGCACGAG 212502
Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819
||||| || |||||| ||| ||| | ||||| || | || || || ||| | | |
Sbjct 212501 GCTTCCTTCTGGACTACAGAGGAAATTGATCTTGCTAAGGATATACCTGACTGGGACACT 212442
Query 268820 T--TAAAACCAGAA-GAAAGAAGATTTATATCTTATATTCTTG-CGTTTTTTGCAGTTAG 268875
| |||| | || || ||| ||||| || | | | ||| | ||||||||||
Sbjct 212441 AAGTTAAACGAAAATGAGAGATTCTTTATCTCA-AGAGTATTGGCTTTTTTTGCAGCATC 212383
Query 268876 TGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGA 268935
||||||| | ||||| |||||| |||| ||||| || | |||||| || ||||||||
Sbjct 212382 TGATGGTCTTGTTAATGAAAATTTAGTTGAGAACTTTTCAGCAGAGGTTCAAATTCCTGA 212323
Query 268936 AGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAG 268995
||||| | |||| || || |||||||| | ||||||||| ||||| || | |||
Sbjct 212322 AGCCAAAAGTTTCTATGGGTTCCAGATCATGACAGAAAATATACATTCTGAAACTTACTC 212263
Query 268996 TCTATTAATAGATACTTATAT-AGATGATAACAACGAAAAGAAAAGACTATTTTCTT--- 269051
| || |||||||||| || ||| || | ||||| ||||| | |||||
Sbjct 212262 TGTACAGTTAGATACTTACATTAGA-GACCCTATTGAAAA----AGACTTTCTTCTTAAT 212208
Query 269052 -CTAT-GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAA 269109
| || | ||| || ||| | | | | || |||| ||| || |||||||||| ||
Sbjct 212207 GCAATTGTCAAC-ATCCCATGTATCAAACAGAAGGCTGACTGGACTTTGAAATGGATTAA 212149
Query 269110 CGATAGCGC-GCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATT 269166
||| | || ||| || ||| | |||||||||||||| || | |||||| ||||
Sbjct 212148 CGACGATGAAGCATTATTTGGGGAACGATTAGTTGCTTTTGCAACTATTGAAGGTGTATT 212089
Query 269167 CTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATT 269226
|| || || || ||||| || || ||||||||||| || ||||| | ||||| || ||
Sbjct 212088 TTTCTCTGGATCATTTGCTGCCATATTTTGGTTGAAAAAGAGAGGTTTAATGCCTGGTTT 212029
Query 269227 AACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTT 269286
||| || ||||| ||| | || | | || |||||| |||| || || | |||||
Sbjct 212028 AACCTTTTCTAATGAACTTATCTGTCGAGATGAAGGTCTACATACAGATTTTGGATGTTT 211969
Query 269287 ATTATTTACTAATTATCTTTC-ACACAAACCTTCTCAAGATAGAGTATACGAAATTATAG 269345
|||||| || | ||| | | | |||||| || || || || | ||||| |
Sbjct 211968 ATTATTCGCTCA----CTTGCAAAATAAACCTGATCCAGCTATTGTCGAGAAAATTGTCA 211913
Query 269346 ATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTATCTATCGATC-TTA-T 269403
| ||||||| | |||| ||||| | || || ||||| || || || ||| |
Sbjct 211912 CTGAAGCTGTTGTGATTGAAAAAGAATACTTTACCGAGGCTCTTCCTGTC--TCATTACT 211855
Query 269404 CGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGT 269463
||||||||| || | | |||| |||| ||| | | || ||||||||||||| ||
Sbjct 211854 TGGTATGAATTGCGACTTGATGTGTCAATACATTGAATATGTTGCTGATAGATTGCTCGT 211795
Query 269464 GTCTTTAGGGTTTAGTAAAAA---ATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAA 269520
|||| || | |||||| ||| | | | |||||| || |||||||| ||
Sbjct 211794 TGCTTTGGG---AAATAAAAAGGTTTATGATGCTACAAATCCTTTCGACTTTATGGAAAA 211738
Query 269521 TATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAAT 269580
||| || | | |||||| |||||||||| || ||| | || | ||||| || |
Sbjct 211737 TATTTCTCTTGTTGGTAAGACTAATTTCTTTGAAAAGAGAGTTTCAGATTATCAAAAGAC 211678
Query 269581 GGGTGTAATG 269590
||||| |||
Sbjct 211677 AGGTGTTATG 211668
>seq5
Length=1301127
Score = 174 bits (192), Expect = 4e-38
Identities = 177/231 (77%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||||| || | || | |||||| || ||||| || || || || || ||||||
Sbjct 1173646 CCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGAT 1173705
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| ||| | || ||||||| ||| || |||||||| |||| | ||||| || |||||
Sbjct 1173706 AAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGGG 1173765
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
|||||||| || ||||| ||||||| || ||||| || | |||||| | ||||||
Sbjct 1173766 ATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGATGACTCTACC 1173825
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
|| || |||||||||||||| ||||| ||||| ||||| |||||||| |||
Sbjct 1173826 TCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCATCTTG 1173876
Score = 91.5 bits (100), Expect = 3e-13
Identities = 97/128 (76%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 165141 TTTTACATATAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAA 165200
||||||||||||| | | || |||||||||||| | || || || || ||| | ||||
Sbjct 281383 TTTTACATATAGAATTGAAAAAATGGGCAGATATTTTTTTAATTGCTCCATTATCTGCAA 281324
Query 165201 ACAGTTTAGCGAAGATAGCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAG 165260
| | ||| || || || || || ||| | ||| |||| || ||||| |||||||||||
Sbjct 281323 ATACTTTGGCTAAAATTGCAAATGGTCTATGTGATAATTTATTAACTAATATAGTTAGAG 281264
Query 165261 CGTGGAAT 165268
| ||||||
Sbjct 281263 CCTGGAAT 281256
>seq21
Length=453462
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
|| || ||||||| || | || | ||||| ||||| || || || || || || |||
Sbjct 371753 ATACCACCTCTTAATCTTAAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAATCA 371694
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|||| ||| | ||| |||||||||||||| ||||||||||||| | |||||||| ||
Sbjct 371693 GATAAAGTACGACCATCTTCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGG 371634
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| |||||||| || || || ||||||| ||| ||||| || | ||||| || | |||
Sbjct 371633 GGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACATTATCGATTGTATCACTGGATTCG 371574
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559
||||| || || || || ||||| || || || || ||||| ||||||||
Sbjct 371573 ACCTCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGACAAAAATCTGCAT 371524
>seq12
Length=712717
Score = 158 bits (174), Expect = 3e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392
|| ||||| | || || || | |||||| || ||||| || || || || |||||||||
Sbjct 150925 CCACCTCTCAATCTGAGAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAGTCAGAT 150984
Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452
| || | || ||||| | ||| || ||||||||||| | | |||||||| |||||
Sbjct 150985 AAGGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 151044
Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACC 104512
||||| || ||||| |||||||||| ||| ||||| || | || || | || |||
Sbjct 151045 ATTCCCTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGACTCAACC 151104
Query 104513 TCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562
|| || ||||| ||||| || ||||| ||||| ||||| |||||||||||
Sbjct 151105 TCAAGAGTAATTGTCTTCCCTGTAAGGGTTTTAACAAAAATCTGCATTTT 151154
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151396393688288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |