Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq8 152 4e-32 seq5 120 3e-22 seq12 98.7 9e-16 >seq8 Length=1087023 Score = 152 bits (168), Expect = 4e-32 Identities = 182/241 (76%), Gaps = 7/241 (3%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || || || |||||||||||| |||| || |||| || || || Sbjct 676915 ACAATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATTACTCTCGAGGTTGAATCC 676856 Query 25056 TCTGACACTATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCT 25112 ||||||||||| || || || ||| |||||| ||| ||||| ||||| ||||| || Sbjct 676855 TCTGACACTATTGA--CAATGTTAAGTCAAAAATTCAA-GACAAGGAAGGAATTCCTCCA 676799 Query 25113 GACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGAT 25172 |||||||| | | || |||||||| |||||||||||||| | || || | || Sbjct 676798 GACCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGACGTACCTTATCTGAC 676739 Query 25173 TACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTAT 25232 ||||| |||||||| |||||||| ||||||| || | || ||||||| || ||||| Sbjct 676738 TACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTAAGAGGTGG-TATTAT 676680 Query 25233 T 25233 | Sbjct 676679 T 676679 >seq5 Length=1301127 Score = 120 bits (132), Expect = 3e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | |||||||| | || || |||| || ||||| || Sbjct 1173872 ATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGTAGAGTCATCC 1173813 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 || ||||| || || || ||| ||| ||| ||||| ||||| || || || |||| Sbjct 1173812 GATACTATTGA--CAATGTTAAGTCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACC 1173755 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| || | || ||||| || || ||||||||||||| || ||| | ||||||| Sbjct 1173754 AACAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGATGGACGTACTTTATCTGATTACA 1173695 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | || ||||| ||||| || ||||||| || | || ||||||| || Sbjct 1173694 ACATCCAAAAGGAATCAACTTTACATTTGGTTTTGAGATTAAGAGGTGG 1173646 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25107 CCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTG 25166 ||||| |||||||| || | |||||||| || || ||||||||||||| ||| || | Sbjct 1113322 CCACCAGACCAACAACGTTTGATTTTTGCTGGTAAGCAATTAGAAGATGGTCGTACATTA 1113263 Query 25167 GGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 || ||||| || ||||| ||||| || || || ||||| || || || | || ||| Sbjct 1113262 TCTGACTACAACATCCAAAAGGAATCTACTCTTCACTTAGTTCTCAGACTTCGTGGTGGA 1113203 Query 25227 AATTA 25231 ||||| Sbjct 1113202 AATTA 1113198 >seq12 Length=712717 Score = 98.7 bits (108), Expect = 9e-16 Identities = 170/244 (70%), Gaps = 11/244 (5%) Strand=Plus/Minus Query 24986 ACAAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGA 25045 |||||| || |||||| || ||||| || || | || || || | || || | || Sbjct 151161 ACAAAA---AAAAATGCAGATTTTTGTTAAAACCCTTACAGGGAAGACAATTACTCTTGA 151105 Query 25046 AGTGGAGTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAG 25101 || ||||| ||||||||||| || |||| || |||| | ||| || || || | Sbjct 151104 GGTTGAGTCATCTGACACTATTGATAATGTCA---AATCAAAGATTCA-AGATAAGGAGG 151049 Query 25102 GGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCA 25161 | ||||| || || ||||| || | |||||||| || || ||||| ||||||| || | Sbjct 151048 GAATTCCTCCAGATCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGTA 150989 Query 25162 CTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAG 25221 | | || ||||| || ||||| ||||| || ||||||| || || || | |||| Sbjct 150988 CCTTATCTGACTACAACATCCAAAAGGAATCAACTTTACATTTGGTTCTCAGATTGAGAG 150929 Query 25222 GAGG 25225 | || Sbjct 150928 GTGG 150925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327281758840