Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03-
01] 136 sequences; 24,815,695 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq8 132 5e-26
seq5 129 6e-25
seq21 107 2e-18
seq12 93.3 4e-14
>seq8
Length=1087023
Score = 132 bits (146), Expect = 5e-26
Identities = 169/229 (74%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| || | |||||| ||||||| | || ||||||||||||||||||||
Sbjct 676686 CCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGAT 676745
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||| || | ||||||||||| | |||||| | |||||||| |||||
Sbjct 676746 AAGGTACGTCCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGAGGA 676805
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| ||||| ||||| ||| |||||| ||| |||| || | ||||| | || || |
Sbjct 676806 ATTCCTTCCTTGTC-TTGAATTTTTGACTTAACATTG-TCAATAGTGTCAGAGGATTCAA 676863
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | |||||||| |||| ||||| || || ||||||||
Sbjct 676864 CCTCGAGAGTAATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCAT 676912
>seq5
Length=1301127
Score = 129 bits (142), Expect = 6e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| || | |||||| ||||||| |||| |||||||| |||||||| ||
Sbjct 1173646 CCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGAT 1173705
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| |||||| || || | ||| ||||| | | |||||| ||| |||||||| |||||
Sbjct 1173706 AAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGGG 1173765
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| ||||| ||||| ||| ||| || | ||||| | | || |||| ||||| ||
Sbjct 1173766 ATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGT-CAATAGTATCGGATGACTCTAC 1173824
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || | || ||||| || || ||||| ||||||||||||||
Sbjct 1173825 CTCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCAT 1173872
>seq21
Length=453462
Score = 107 bits (118), Expect = 2e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 138403 AAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCC 138462
||||| || |||| | | ||||||||||| |||||||| || | |||||| ||
Sbjct 371735 AAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAATCAGATAAAGTACGACCATCT 371676
Query 138463 TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCG 138522
|| ||||||||||| | | | |||| ||| ||||| || || || || ||||| |||||
Sbjct 371675 TCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCT 371616
Query 138523 GTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTT 138582
||| ||| ||| | | || | || || | || || ||||| | || | |||
Sbjct 371615 TGGATCTTTGATTTAACATTATCGATTGTATCACTGGATTCGACCTCAAGAGTGATGGTT 371556
Query 138583 TTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||||| || || || || ||||||||||||||
Sbjct 371555 TTACCCGTTAGCGTCTTGACAAAAATCTGCAT 371524
>seq12
Length=712717
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/228 (70%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| |||| ||| | | ||| ||||||| |||| |||||||| |||||||||||
Sbjct 150925 CCACCTCTCAATCTGAGAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAGTCAGAT 150984
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| || || | ||| ||||| | | | || | ||| ||||| || |||||
Sbjct 150985 AAGGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGA 151044
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566
|| || || || || ||| | |||| ||| | | || | ||||| | ||||| ||
Sbjct 151045 ATTCCCTCCTTATC-TTGAATCTTTGATTTGACATTATCAATAGTGTCAGATGACTCAAC 151103
Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
||| | || | || || || || || ||||| ||||||||||||||
Sbjct 151104 CTCAAGAGTAATTGTCTTCCCTGTAAGGGTTTTAACAAAAATCTGCAT 151151
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496261556353920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |