Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1 125 9e-24 seq14 84.2 3e-11 >seq1 Length=2214157 Score = 125 bits (138), Expect = 9e-24 Identities = 350/534 (66%), Gaps = 6/534 (1%) Strand=Plus/Plus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 ||| | |||| | || | |||||||| || | ||| ||||| ||| | || |||||||| Sbjct 31272 CCATAAATCATATTGTAAAATACCTTGAGATGTTGGTGATCCTTCATAAGTTTCATATGG 31331 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || | | || ||||| | || || | || || ||||| || || ||||| Sbjct 31332 TCCTAATTCTTTTGCTAATTCACATGATGCTTCAACAGCAGCATGATAAATAGTTTCAAA 31391 Query 116184 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAA 116243 || || || | | || || || |||||||| | | ||| | ||||| Sbjct 31392 TATTTGAATGTTTAATAATTTAGCTTCAGGTGAATCAAATGGTAAACGAAGACACATAAA 31451 Query 116244 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 116303 |||| || | |||||| ||||| | ||||||| | |||||||||||| || |||| Sbjct 31452 AGCATCAGCTAAACCTTGAACACCTAAAGCAATTGGTCTATGTCTCATATTTGAATTTCT 31511 Query 116304 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 116363 || || |||||| |||||||||| |||| |||||| ||| ||||| Sbjct 31512 TGCTTCAATAACTGGATAATAATTCCTATCAATAATTTTATTTAAATTACGAACAACAAC 31571 Query 116364 CTTTGTGATTTCATGAAGCTTTTCGTAATCA-AAACTGCGA--GTCTCTTC---ATTGAC 116417 ||||| || |||||||| |||| ||| | ||| || | | ||||| || | Sbjct 31572 TTTTGTAATATCATGAAGTTTTTGAAAATTATAAATTGAAACGTTATCTTCAATATCAAT 31631 Query 116418 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 116477 | | | || | || | ||| || | ||| || |||| ||||| ||| || Sbjct 31632 AAATGTTGGTAATGCTAATGATGCTAAATTGCAAACAGCAACTTCATCGGGTGCAGAATA 31691 Query 116478 CTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGA 116537 || | |||||| ||| ||||||||||| || || || || | || |||||||| Sbjct 31692 TTCAACAATTTCACAACATAAATTTGAACTTTTTATTGTACCAAGATTTTTTTGATTACT 31751 Query 116538 CTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 ||| | ||||| ||||| || || |||||| |||| | || || || ||||| Sbjct 31752 TTTTTTATTACATGCATCTTTATAAAGCATAAATGGAATACCAGTTTCTGTTTG 31805 >seq14 Length=670130 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || ||| ||||| || ||||| |||| | |||||| || || || || Sbjct 578303 AGCAAAATCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAAGTAAGGCC 578244 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||| | ||| | ||| || ||||||||||| | || || |||||||| || || Sbjct 578243 TGGCATTAAACCTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAGAAAAAAAT 578184 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 || || ||| ||||| |||| ||||| || ||||| Sbjct 578183 ACCTTCAACAGCAGCGAAAGCAACAAGACGTTCAGCAAA 578145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506157037760