Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq14 304 2e-77 seq8 116 5e-21 seq5 102 1e-16 seq21 98.7 1e-15 >seq14 Length=670130 Score = 304 bits (336), Expect = 2e-77 Identities = 587/859 (68%), Gaps = 30/859 (3%) Strand=Plus/Minus Query 17861 GCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATT 17920 ||||||| || || ||| | |||||||| || |||||||| || | ||||| || Sbjct 578599 GCTTTTTGATAATCAGAAACTCTCTTCTCGAAAAAGTTTGTCTTACCAGCTAATGAAATA 578540 Query 17921 AAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTAT--TAATTCGT 17978 | ||| || |||||||||||||| || ||| | ||||||| || | Sbjct 578539 TTCTCCATGAAGTCAAATGGATTAGTAACATTGTAAA--TCTTCTTGTTACCTAGAGCAA 578482 Query 17979 ATAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTA 18038 ||| | | ||| || ||| |||| |||||||| ||||||||| |||||||||||| | Sbjct 578481 CTAAAAGACGATCGGCAACATATTCAACATATTGACACATCAAATTGCAATTCATACCAA 578422 Query 18039 GTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 ||| | | || |||||||| ||| |||| ||||| || |||| |||| | | Sbjct 578421 GTAATGAGGCTGGAAGAGCATCTGTAAAGTATTCCTTCTCAATAGTTACAGCCTCTGTAA 578362 Query 18099 TTATGTTTATTACCCTA----GATTTTGGCAATTTATTAATTATGTGATTATAATATAAT 18154 |||| ||| || || ||| | | |||| || ||| || | ||||| Sbjct 578361 TTATCTTTTCAACAATAATTGGATCGGGTCTATTTTCCAA--ATGGGA-----AAATAAT 578309 Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 || || |||||||||||||| | ||||||||| | | || ||||| ||| ||| || Sbjct 578308 AAGCAAGCAAAATCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAAGTA 578249 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 | || ||||||| |||||| ||||||| ||| || || ||||||||| || ||| || Sbjct 578248 AGGCCTGGCATTAAACCTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAGAAA 578189 Query 18275 AATATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGC 18332 || ||||| ||||| ||| ||||| || | | | ||||||||| | || || | Sbjct 578188 AAAATACCTTCAACAGCA-GCGAAAGCAACAAGACGTTCAGCAAATAATG--CTTCCTTA 578132 Query 18333 TCAGT-ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATA 18391 ||| | |||||| || ||||| ||| | | ||||| || | | | || ||| Sbjct 578131 TCACTAATCCATCTTAAAGCCCAATCTGCCTTCTTCTTAATACAAGGAACATTTTCAATA 578072 Query 18392 GCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA 18451 ||||| || ||| || ||||| |||||||| ||||| ||||| ||||| | ||| Sbjct 578071 GCATTGAATAAAAATTCACGCTCTTTAGAATCTTTAATATATGTGTCAATTAATAGTGAA 578012 Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG 18511 || | ||||| ||||| ||||||| || || |||| |||||| | |||| || Sbjct 578011 TATGTCTCAGAGTGTATATTTTCCATCATGATTTGGAAACCATAAAAGCACTTAGCTTCT 577952 Query 18512 GGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 || ||||| ||| |||| |||| || ||||| || ||||| ||||| || | | Sbjct 577951 GGTGTTTGAACCTCAGCCGAAAAGTTTTCAACTAAATTTTCGTTAACAATACCATCTGAA 577892 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAA------TGTTTTTCATTATCCTTGAGA 18625 | |||||||| || || || | ||| ||| | | || |||| ||| | Sbjct 577891 GCAGCGAAAAAGGCTAAGACGCGTGAAATAAAAAAACGCTCATCTTTATTAAGCTT---A 577835 Query 18626 TTGTTCCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGAT 18685 || | ||| ||| | |||||||| || ||||| |||||| | ||||| ||||||| | Sbjct 577834 TTTTCCCAATCACCAATATCTTTACTTAAATCAATTTCTTCAGCAGTCCAGAAAGATGCT 577775 Query 18686 TCGGCCTGTTTGTACATTT 18704 || |||| ||| ||||||| Sbjct 577774 TCAGCCTTTTTATACATTT 577756 Score = 194 bits (214), Expect = 2e-44 Identities = 581/882 (66%), Gaps = 27/882 (3%) Strand=Plus/Plus Query 17865 TTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAA 17923 ||||| || ||| ||| | || || |||||||| ||||| || | | || || Sbjct 211681 TTTTGATAATCTGAAACTCTCTTTTCAAAGAAATTAGTCTTACCAACAAGAGAAATATTT 211740 Query 17924 TTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAAT 17983 | |||||| || || ||||| || | | |||| |||| | | || | | Sbjct 211741 TCCATAAAGTCGAAAGGATTTGTAGCATCATAAACCTTTTTATTTCCCAAAGCAACGAGC 211800 Query 17984 AATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGT 18043 |||||||| || ||| |||| | ||||| ||||||| |||||||||||||| |||| | Sbjct 211801 AATCTATCAGCAACATATTCAATGTATTGACACATCAAGTCGCAATTCATACCAAGTAAT 211860 Query 18044 CTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTATG 18103 || ||| ||||| || ||| ||||||| || ||| |||||| || | | || Sbjct 211861 GAGACAGGAAGAGCCTCGGTAAAGTATTCTTTTTCAATCACAACAGCTTCAGTGACAATT 211920 Query 18104 TTTATTACCCTAGATTTTGG--CAA-TTTATTAATTATGTGATTATAATATAATAAACAC 18160 || || ||| | || || |||||| | |||| | ||||||||| Sbjct 211921 TTCTCGACAATAGCT---GGATCAGGTTTATTTTGCAAGTGAGCGAA---TAATAAACAT 211974 Query 18161 GCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCG 18220 ||||||| || |||| ||||||||||| | || | ||| ||| ||| ||||| || Sbjct 211975 CCAAAATCTGTATGTAGACCTTCATCTCGACAGATAAGTTCATTAGAAAAGGTTAAACCA 212034 Query 18221 GGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATA 18280 ||||||| |||||| ||||| | ||||||||| | || || | ||| || |||| | Sbjct 212035 GGCATTAAACCTCTCTTTTTCAACCAAAATATGGCAGCAAATGATCCAGAGAAAAATACA 212094 Query 18281 CCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCAGT-A 18338 || |||| || || || | ||||| ||| |||| | || || || | || | | Sbjct 212095 CCTTCAATAGTTGCAAAAGCAACTAATCGTTCCCCAAATAATG-CTTCATCG-TCGTTAA 212152 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 ||||||| | ||| || | | ||||| || || | | || ||||||| Sbjct 212153 TCCATTTCAAAGTCCAGTCAGCCTTCTGTTTGATACATGGGATGTTGACAATTGCATTAA 212212 Query 18399 ACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAAC---AAAGAATACA 18455 | | |||||||| | | ||| | || ||||| || |||| | ||| || Sbjct 212213 GAAGAAAGTCTTTTTCAATAGGGTCTCTAATGTAAGTATC---TAACTGTACAGAGTAAG 212269 Query 18456 TTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGAT 18515 ||||||||||||| |||| | ||||| || | ||| || | | || || ||| Sbjct 212270 TTTCAGAATGTATATTTTCTGTCATGATCTGGAACCCATAGAAACTTTTGGCTTCAGGAA 212329 Query 18516 ATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGAT 18574 ||||| ||| ||| |||| | || || ||||| |||||||| | ||| |||| | | Sbjct 212330 TTTGAACCTCTGCT-GAAAAGTTCTCAACTAAATTTTCATTAACAAGACCATCAGATGCT 212388 Query 18575 GCGAAAAATGCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTGTT 18630 || ||||| ||||| || | || | || || | | ||||| || || | | ||| Sbjct 212389 GCAAAAAAAGCCAATAC-TCTTGAGATAAAGAATCTCTCATTTTCGTTTAACTTAGTGTC 212447 Query 18631 CCATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGC 18690 ||| ||| |||||| || | ||||||| ||| || | ||||| || || | ||| Sbjct 212448 CCAGTCAGGTATATCCTTAGCAAGATCAATTTCCTCTGTAGTCCAGAAGGAAGCCTCGTG 212507 Query 18691 CTGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAA 18732 || |||||||||| |||| || ||| || || ||||| Sbjct 212508 CTTCTTGTACATTTGCCAAATTTCACCATATTTAATTGGAAA 212549 >seq8 Length=1087023 Score = 116 bits (128), Expect = 5e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 || |||||| || || | ||||| ||||| || ||||| ||||| | || || ||| Sbjct 676916 TACAATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATTACTCTCGAGGTTGAATC 676857 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||| | |||| || || || ||||| ||||| || ||||| || |||||||| Sbjct 676856 CTCTGACACTATTGACAATGTTAAGTCAAAAATTCAAGACAAGGAAGGAATTCCTCCAGA 676797 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 ||||||||||| || | ||||||||| || | ||||| | || ||||| || || Sbjct 676796 CCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGACGTACCTTATCTGACTA 676737 Query 155999 TAATATATCCAAAG-AGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || |||| | | || | ||||| || || ||||||||||| ||| Sbjct 676736 CAACAT-TCAAAAGGAATCCACTTTACATTTGGTTTTGAGATTAAGAGGTGGT 676685 >seq5 Length=1301127 Score = 102 bits (112), Expect = 1e-16 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | ||||| | || || || |||||||| | || || || Sbjct 1173875 AAGATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGTAGAGTCA 1173816 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| |||| || || || || || || || || ||||| || |||||||| Sbjct 1173815 TCCGATACTATTGACAATGTTAAGTCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGAC 1173756 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 |||||| | || || | ||| |||||||| | |||||| | |||||||| ||||| Sbjct 1173755 CAACAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGATGGACGTACTTTATCTGATTAC 1173696 Query 156000 AATATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || ||||| || | || | ||||| || || ||||||||||| |||| Sbjct 1173695 AACAT--CCAAAAGGAATCAACTTTACATTTGGTTTTGAGATTAAGAGGTGGTG 1173644 >seq21 Length=453462 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | || || ||||| || || | || |||||| | Sbjct 371524 ATGCAGATTTTTGTCAAGACGCTAACGGGTAAAACCATCACTCTTGAGGTCGAATCCAGT 371583 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| || || ||||| || ||||| || || ||||| ||| Sbjct 371584 GATACAATCGATAATGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 371643 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || |||| ||| ||||| || || |||||| | |||||||| ||||| || Sbjct 371644 CAACGTTTAATTTTTGCTGGTAAACAACTAGAAGATGGTCGTACTTTATCTGATTACAAC 371703 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || ||||| ||| | || | || || || |||||||||||||| ||| Sbjct 371704 AT--CCAAAAGGAGTCTACCTTACACTTGGTTTTAAGATTAAGAGGTGGT 371751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870755817600