Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq14 214 3e-50 seq8 185 2e-41 seq21 154 3e-32 seq5 138 2e-27 seq12 136 7e-27 >seq14 Length=670130 Score = 214 bits (236), Expect = 3e-50 Identities = 552/848 (65%), Gaps = 10/848 (1%) Strand=Plus/Minus Query 38831 TTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAA 38890 |||||| || ||||||||| | || |||||||||||||| || || ||||||| || Sbjct 578597 TTTTTGATAATCAGAAACTCTCTTCTCGAAAAAGTTTGTCTTACCAGCTAATGAAATATT 578538 Query 38891 ATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATA-CATATA 38949 | ||| || ||||||||||| | ||| ||| || || | || | | | || || Sbjct 578537 CTCCATGAAGTCAAATGGATTAGTAACATTGTAA-ATCTTCTTGTTACCTAGAGCAACTA 578479 Query 38950 ATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAATA 39009 | | | |||||| ||| ||||||||||||| |||| || | ||||||||||| | || Sbjct 578478 AAAGACGATCGGCAACATATTCAACATATTGACACATCAAATTGCAATTCATACCAAGTA 578419 Query 39010 ATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatta 39069 || ||| | ||||| || |||| || || || |||||| | | |||||| Sbjct 578418 ATGAGGCTGGAAGAGCATCTGTAAAGTATTCCTTCTCAATAGTTACAGCCTCTGTAATTA 578359 Query 39070 tcataattatattattttttgataatttatatttaatatgattcgcatataGTAAACATG 39129 || | || | || || ||| | ||||| | || | | ||| ||| || | Sbjct 578358 TCTT--TTCAACAATAATTGGATCGGGTCTATTTTCCAA-ATGGGAAAATAATAAGCAAG 578302 Query 39130 CAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTG 39189 ||||||| || || | |||||| || | | | || ||||||||| |||||| | |||| Sbjct 578301 CAAAATCAGTGTGAAGACCTTCATCACGACAGATCAATTCATTAGAAAAAGTAAGGCCTG 578242 Query 39190 GCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATATAC 39249 ||||||| ||||||||||| | ||| || || ||||| ||| || ||| || || |||| Sbjct 578241 GCATTAAACCTCTCTTTTTTAACCAGAAAATAGATGCGAAAGAACCAGAGAAAAAAATAC 578182 Query 39250 CCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAATCC 39309 | || ||| || || || | | | | | |||| | | || | ||| ||||| Sbjct 578181 CTTCAACAGCAGCGAAAGCAACAAGACGTTCAGCAAATAATGCTTCCTTATCACTAATCC 578122 Query 39310 AATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAAATA 39369 | ||| ||||||||||| || || || ||| |||| | |||||| ||||| || |||| Sbjct 578121 ATCTTAAAGCCCAATCTGCCTTCTTCTTAATACAAGGAACATTTTCAATAGCATTGAATA 578062 Query 39370 ATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTTCAG 39429 | | ||||| | |||| Sbjct 578061 AAAATTCACGCTCTTTAGAATCTTTAATATATGTGTCAATTAATAGTGAATATGTCTCAG 578002 Query 39430 AATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATACTGAA 39489 | |||| | |||||| ||||| || |||||| | | ||||||| |||| Sbjct 578001 AGTGTATATTTTCCATCATGATTTGGAAACCATAAAAGCACTTAGCTTCTGGTGTTTGAA 577942 Query 39490 CTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGA 39549 | || | | || |||||||||||| || ||||||||||| || || ||||| | Sbjct 577941 CCTCAGCCGAAAAGTTTTCAACTAAATTTTCGTTAACAATACCATCTGAAGCAGCGAAAA 577882 Query 39550 ATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAA----ATTTTCCCAAGAT 39605 | ||||| || | ||||||| ||| | | | |||| |||||||||| Sbjct 577881 AGGCTAAGACGCGTGAAATAAAAAAACGCTCA-TCTTTATTAAGCTTATTTTCCCAATCA 577823 Query 39606 TCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTA 39665 ||| ||| || |||||| | |||||| ||||| ||||||||| | | |||||| Sbjct 577822 CCAATATCTTTACTTAAATCAATTTCTTCAGCAGTCCAGAAAGATGCTTCAGCCTTTTTA 577763 Query 39666 TACATTTG 39673 |||||||| Sbjct 577762 TACATTTG 577755 Score = 163 bits (180), Expect = 5e-35 Identities = 364/543 (67%), Gaps = 19/543 (3%) Strand=Plus/Plus Query 38832 TTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTAAA 38891 ||||| || || |||||| | ||||| || || || || || || | | || || Sbjct 211681 TTTTGATAATCTGAAACTCTCTTTTCAAAGAAATTAGTCTTACCAACAAGAGAAATATTT 211740 Query 38892 TTCATAAAATCAAATGGATTTTTGGTATTATAA---TATTTTTCTCCTATCAATACATAT 38948 | |||||| || || |||||| | | || |||| | ||| | ||| ||| || Sbjct 211741 TCCATAAAGTCGAAAGGATTTGTAGCATCATAAACCTTTTTATTTCC---CAAAGCAACG 211797 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 | |||||||| || ||| |||||| ||||| |||| || || ||||||||||| | | Sbjct 211798 AGCAATCTATCAGCAACATATTCAATGTATTGACACATCAAGTCGCAATTCATACCAAGT 211857 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgttt---a 39065 ||| | || | || || || |||||||||| || | ||||||| | | Sbjct 211858 AATGAGACAGGAAGAGCCTCGGTAAAGTATTCTTTTTCAATCACAACAGCTTCAGTGACA 211917 Query 39066 attatcataattatattattttttgataa--tttatatttaatatgattcgcatataGTA 39123 ||| || | ||| | ||| | ||||| || | ||| || ||| || Sbjct 211918 ATTTTCTCGACAATAGC-----TGGATCAGGTTTATTTTGCAAGTGA---GCGAATAATA 211969 Query 39124 AACATGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTA 39183 ||||| ||||||| ||||||| |||||| || | | | |||| ||||||| ||| |||| Sbjct 211970 AACATCCAAAATCTGTATGTAGACCTTCATCTCGACAGATAAGTTCATTAGAAAAGGTTA 212029 Query 39184 ATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGA 39243 | || |||||||| ||||||||||| | ||||||||| | ||||| | ||| || | Sbjct 212030 AACCAGGCATTAAACCTCTCTTTTTCAACCAAAATATGGCAGCAAATGATCCAGAGAAAA 212089 Query 39244 ATATACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTA 39303 ||| ||| || | | ||||| || | || || | | ||||| | | || ||| || Sbjct 212090 ATACACCTTCAATAGTTGCAAAAGCAACTAATCGTTCCCCAAATAATGCTTCATCGTCGT 212149 Query 39304 AAATCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTT 39363 |||||| || | | ||| || || || | ||||||| | || || || | || || | Sbjct 212150 TAATCCATTTCAAAGTCCAGTCAGCCTTCTGTTTGATACATGGGATGTTGACAATTGCAT 212209 Query 39364 TAA 39366 ||| Sbjct 212210 TAA 212212 >seq8 Length=1087023 Score = 185 bits (204), Expect = 2e-41 Identities = 183/237 (77%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||||||||| | || || || ||||||||||| | || || ||| || || Sbjct 676680 ATAATACCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAG 676739 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||| | ||| |||| || ||||||||||| ||||| |||||||| |||||||| Sbjct 676740 TCAGATAAGGTACGTCCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCT 676799 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || |||||||| || ||||| ||||| || ||||| ||||| || || ||| Sbjct 676800 GGAGGAATTCCTTCCTTGTCTTGAATTTTTGACTTAACATTGTCAATAGTGTCAGAGGAT 676859 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 || || || ||||||||||||||||| || || ||||| | ||| ||||||||| || Sbjct 676860 TCAACCTCGAGAGTAATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCATTGTA 676916 >seq21 Length=453462 Score = 154 bits (170), Expect = 3e-32 Identities = 174/233 (75%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 171837 ATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAA 171896 |||||||||||||| | || ||| || || ||||| |||| ||| || || || ||| Sbjct 371756 ATAATACCACCTCTTAATCTTAAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAA 371697 Query 171897 TCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCA 171956 || ||||||| || | || || | ||||||||||||||||||||| | ||||| || Sbjct 371696 TCAGATAAAGTACGACCATCTTCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCT 371637 Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 || || |||||||| || ||||| || || ||| |||||| || ||||| ||| Sbjct 371636 GGGGGAATTCCTTCCTTGTCTTGGATCTTTGATTTAACATTATCGATTGTATCACTGGAT 371577 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| ||||||||||| |||| || || | || |||||||| Sbjct 371576 TCGACCTCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGACAAAAATCTGCAT 371524 >seq5 Length=1301127 Score = 138 bits (152), Expect = 2e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 171834 TTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTA 171893 ||| || ||||||||| | || || || ||||||||||| | || || || || Sbjct 1173637 TTCTTACCACCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTG 1173696 Query 171894 TAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGG 171953 ||||| ||||||| ||| | || || ||||| ||||||||||| ||||| | |||||| Sbjct 1173697 TAATCAGATAAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGG 1173756 Query 171954 TCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGAC 172013 || || || |||||||| || || || || || || ||||| |||||||| || Sbjct 1173757 TCTGGAGGGATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGAT 1173816 Query 172014 GATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| || || ||||| || ||||| || | ||||| | || |||||||| || Sbjct 1173817 GACTCTACCTCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCATCTT 1173875 >seq12 Length=712717 Score = 136 bits (150), Expect = 7e-27 Identities = 176/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || ||||||||| | || | || ||||||||||| | || || || || Sbjct 150915 TTTCTTACCACCACCTCTCAATCTGAGAACCAAATGTAAAGTTGATTCCTTTTGGATGTT 150974 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || ||||| | || | || |||||||| |||||||||||||| || | ||||| Sbjct 150975 GTAGTCAGATAAGGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTTG 151034 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 || || || ||||| || |||||||| || || ||| |||||| ||||| || || Sbjct 151035 ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAGA 151094 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || || |||||||| || || || || | ||||||| || ||||||||||| Sbjct 151095 TGACTCAACCTCAAGAGTAATTGTCTTCCCTGTAAGGGTTTTAACAAAAATCTGCATTTT 151154 Query 172073 ATT 172075 || Sbjct 151155 TTT 151157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905134461268800