Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq21 185 2e-41 seq8 172 1e-37 seq12 163 6e-35 seq5 154 3e-32 seq14 102 2e-16 >seq21 Length=453462 Score = 185 bits (204), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | | ||| ||||| | ||||| || || || || || ||||||| Sbjct 371752 TACCACCTCTTAATCTTAAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAATCAG 371693 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | | ||| |||||||||||||| |||||||| |||| | |||||||||||| | Sbjct 371692 ATAAAGTACGACCATCTTCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGGG 371633 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| ||||| ||||||| ||| ||||| || || |||||| | | ||| | Sbjct 371632 GAATTCCTTCCTTGTCTTGGATCTTTGATTTAACATTATCGATTGTATCACTGGATTCGA 371573 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT-TATT 82814 | || | ||| || || || || || | |||||| ||||| |||||||| |||| Sbjct 371572 CCTCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGACAAAAATCTGCATCTATT 371519 >seq8 Length=1087023 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || ||| || || | ||| ||||| || || || || || |||| Sbjct 676684 TACCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAG 676743 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | | |||||||||| |||||| || |||||||||| ||||||||| ||||||| Sbjct 676744 ATAAGGTACGTCCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGAG 676803 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||| |||||||| |||| || ||||| ||||| || ||| | ||| | Sbjct 676804 GAATTCCTTCCTTGTCTTGAATTTTTGACTTAACATTGTCAATAGTGTCAGAGGATTCAA 676863 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || | ||| || || || || ||||| || || || || ||||||||| Sbjct 676864 CCTCGAGAGTAATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCATT 676913 >seq12 Length=712717 Score = 163 bits (180), Expect = 6e-35 Identities = 189/252 (75%), Gaps = 2/252 (1%) Strand=Plus/Plus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 ||| | ||| ||| |||||||| | ||||| || || | ||| ||||| || || || | Sbjct 150915 TTTCTTACC-ACCACCTCTCAATCTGAGAACCAAATGTAAAGTTGATTCCTTTTGGATGT 150973 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 | || ||||||| | | || ||||| | ||| || |||||||| || | | ||||| Sbjct 150974 TGTAGTCAGATAAGGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTT 151033 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 |||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||| || ||| Sbjct 151034 GATCTGGAGGAATTCCCTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAG 151093 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTA 82812 | || || || | ||| || ||||| ||||| | || || ||||| ||||||||| Sbjct 151094 ATGACTCAACCTCAAGAGTAATTGTCTTCCCTGTAAGGGTTTTAACAAAAATCTGCATT- 151152 Query 82813 TTATATTTTTCT 82824 || | || |||| Sbjct 151153 TTTTTTTGTTCT 151164 >seq5 Length=1301127 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| || | || ||| || || | ||| ||||| || || || || |||||||| Sbjct 1173645 ACCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGA 1173704 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | | || ||||||| ||| || ||||||||||||| | |||||| |||||||| Sbjct 1173705 TAAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGG 1173764 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||||||||| || || ||||||| || ||||| ||||| ||||| | ||||| Sbjct 1173765 GATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGATGACTCTAC 1173824 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | || || ||||| || || | || || ||||| |||||||| Sbjct 1173825 CTCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCAT 1173872 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 ||||||||||| ||||||||||| || || || || || ||||||| | | ||| ||| Sbjct 1113219 AGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTACGACCATCT 1113278 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 |||| ||| || |||||||| || | | |||||| ||||| || Sbjct 1113279 TCTAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGTGG 1113322 >seq14 Length=670130 Score = 102 bits (112), Expect = 2e-16 Identities = 181/258 (70%), Gaps = 11/258 (4%) Strand=Plus/Minus Query 143955 GATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTTAGGAGA 144014 ||||| ||| || |||||||| | | ||||| || | ||||| ||| | || ||| Sbjct 58417 GATGAATGGTTAACATGGAAAAATCGATCAGATCCTGTAATTCATATTGAATTAAGAAGA 58358 Query 144015 TGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATAGCCAAT 144074 ||||||||| |||| | || | || ||||| || ||||| ||| ||||| || | | Sbjct 58357 TGGGCTGATATTTTAGTAATTGTTCCATTAACTGCTAATACTTTAAGTAAAATTGCAATT 58298 Query 144075 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 144134 ||| |||| ||||||||| |||| | | ||||||| ||| |||| | || || Sbjct 58297 GGTTTATGTGATAATTTATTAACTAATGTTATAAGAGCTTGGAATAT---TCAATATCCA 58241 Query 144135 ATTTT--TTGC-CCCGCTATGAATACCCTTA--TGTGGGAACATCCTATTACAGAAAAAC 144189 ||||| |||| || ||||| || || | ||||| |||| ||||| |||||| Sbjct 58240 ATTTTAATTGCTCCAAGTATGATTAGTTATAGTTATGGGA--ATCCAATTACTAAAAAAC 58183 Query 144190 ATATAGATACT-TTAAAA 144206 |||| ||| | |||||| Sbjct 58182 ATATTAATATTATTAAAA 58165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981825489166104