Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03-
01] 136 sequences; 24,815,695 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq21 185 2e-41
seq8 172 1e-37
seq12 163 6e-35
seq5 154 3e-32
seq14 102 2e-16
>seq21
Length=453462
Score = 185 bits (204), Expect = 2e-41
Identities = 182/234 (78%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| || | | ||| ||||| | ||||| || || || || || |||||||
Sbjct 371752 TACCACCTCTTAATCTTAAAACCAAGTGTAAGGTAGACTCCTTTTGGATGTTGTAATCAG 371693
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| | | | ||| |||||||||||||| |||||||| |||| | |||||||||||| |
Sbjct 371692 ATAAAGTACGACCATCTTCTAGTTGTTTACCAGCAAAAATTAAACGTTGTTGATCTGGGG 371633
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||| ||||| ||||||| ||| ||||| || || |||||| | | ||| |
Sbjct 371632 GAATTCCTTCCTTGTCTTGGATCTTTGATTTAACATTATCGATTGTATCACTGGATTCGA 371573
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT-TATT 82814
| || | ||| || || || || || | |||||| ||||| |||||||| ||||
Sbjct 371572 CCTCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGACAAAAATCTGCATCTATT 371519
>seq8
Length=1087023
Score = 172 bits (190), Expect = 1e-37
Identities = 176/230 (77%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| ||||| || | || ||| || || | ||| ||||| || || || || || ||||
Sbjct 676684 TACCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAG 676743
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
||| | | |||||||||| |||||| || |||||||||| ||||||||| |||||||
Sbjct 676744 ATAAGGTACGTCCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGAG 676803
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| ||||||||||| |||||||| |||| || ||||| ||||| || ||| | ||| |
Sbjct 676804 GAATTCCTTCCTTGTCTTGAATTTTTGACTTAACATTGTCAATAGTGTCAGAGGATTCAA 676863
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| || | ||| || || || || ||||| || || || || |||||||||
Sbjct 676864 CCTCGAGAGTAATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCATT 676913
>seq12
Length=712717
Score = 163 bits (180), Expect = 6e-35
Identities = 189/252 (75%), Gaps = 2/252 (1%)
Strand=Plus/Plus
Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632
||| | ||| ||| |||||||| | ||||| || || | ||| ||||| || || || |
Sbjct 150915 TTTCTTACC-ACCACCTCTCAATCTGAGAACCAAATGTAAAGTTGATTCCTTTTGGATGT 150973
Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692
| || ||||||| | | || ||||| | ||| || |||||||| || | | |||||
Sbjct 150974 TGTAGTCAGATAAGGTACGGCCATCTTCCAATTGCTTACCAGCAAAAATCAAACGTTGTT 151033
Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752
|||||||||| ||||| ||||||||||||||||||| ||| ||||| ||||| || |||
Sbjct 151034 GATCTGGAGGAATTCCCTCCTTATCTTGAATCTTTGATTTGACATTATCAATAGTGTCAG 151093
Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTA 82812
| || || || | ||| || ||||| ||||| | || || ||||| |||||||||
Sbjct 151094 ATGACTCAACCTCAAGAGTAATTGTCTTCCCTGTAAGGGTTTTAACAAAAATCTGCATT- 151152
Query 82813 TTATATTTTTCT 82824
|| | || ||||
Sbjct 151153 TTTTTTTGTTCT 151164
>seq5
Length=1301127
Score = 154 bits (170), Expect = 3e-32
Identities = 171/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| ||||| || | || ||| || || | ||| ||||| || || || || ||||||||
Sbjct 1173645 ACCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGA 1173704
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | | || ||||||| ||| || ||||||||||||| | |||||| ||||||||
Sbjct 1173705 TAAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGG 1173764
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
||||||||||| || || ||||||| || ||||| ||||| ||||| | |||||
Sbjct 1173765 GATTCCTTCCTTGTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGATGACTCTAC 1173824
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| | || || ||||| || || | || || ||||| ||||||||
Sbjct 1173825 CTCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCAT 1173872
Score = 84.2 bits (92), Expect = 4e-11
Identities = 81/104 (78%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658
||||||||||| ||||||||||| || || || || || ||||||| | | ||| |||
Sbjct 1113219 AGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGTACGACCATCT 1113278
Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|||| ||| || |||||||| || | | |||||| ||||| ||
Sbjct 1113279 TCTAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGTGG 1113322
>seq14
Length=670130
Score = 102 bits (112), Expect = 2e-16
Identities = 181/258 (70%), Gaps = 11/258 (4%)
Strand=Plus/Minus
Query 143955 GATGAGTGGACTACTTGGaaaaaaaTACCCGATCCAGTCTTGCATATAGAACTTAGGAGA 144014
||||| ||| || |||||||| | | ||||| || | ||||| ||| | || |||
Sbjct 58417 GATGAATGGTTAACATGGAAAAATCGATCAGATCCTGTAATTCATATTGAATTAAGAAGA 58358
Query 144015 TGGGCTGATGTTTTTATTATAGCGCCCTTAACAGCAAATACGTTAGCAAAAATAGCCAAT 144074
||||||||| |||| | || | || ||||| || ||||| ||| ||||| || | |
Sbjct 58357 TGGGCTGATATTTTAGTAATTGTTCCATTAACTGCTAATACTTTAAGTAAAATTGCAATT 58298
Query 144075 GGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATATAAATAAACCTCTT 144134
||| |||| ||||||||| |||| | | ||||||| ||| |||| | || ||
Sbjct 58297 GGTTTATGTGATAATTTATTAACTAATGTTATAAGAGCTTGGAATAT---TCAATATCCA 58241
Query 144135 ATTTT--TTGC-CCCGCTATGAATACCCTTA--TGTGGGAACATCCTATTACAGAAAAAC 144189
||||| |||| || ||||| || || | ||||| |||| ||||| ||||||
Sbjct 58240 ATTTTAATTGCTCCAAGTATGATTAGTTATAGTTATGGGA--ATCCAATTACTAAAAAAC 58183
Query 144190 ATATAGATACT-TTAAAA 144206
|||| ||| | ||||||
Sbjct 58182 ATATTAATATTATTAAAA 58165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981825489166104
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |