Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq1 331 2e-85 seq4 132 1e-25 seq14 122 2e-22 seq25 87.8 4e-12 >seq1 Length=2214157 Score = 331 bits (366), Expect = 2e-85 Identities = 588/845 (70%), Gaps = 21/845 (2%) Strand=Plus/Minus Query 110307 TTTGGTTTCAAAACTCTTGAACGTGCTTA---TTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| |||||||||||| | | || |||| | || |||| | | | Sbjct 32558 TTTGGTTTTAAAACTCTTGAAAGATCATACCTTTTAAGACTTG---ATGGTAAAGTTGCT 32502 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||| | || ||||| | || | | ||||| ||||||||||||| |||||||| || Sbjct 32501 GAAAGACCACAACATTTAATTATGAGAGTTGCTGTTGGTATTCATGGTGATGATATTGAA 32442 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAG-TAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 || |||||| ||| || || | | |||| | | | ||||||| |||| || Sbjct 32441 AAAGTCATTGAAACCTATAATTTAATGTCATTAAAATATTTC-ACTCATGCTTCTCCCAC 32383 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 ||||||| || || ||| | | |||| || ||||||| |||||| | | || || Sbjct 32382 TTTATTTAATGCTGGTACTCCTCAACCACAAATGTCTTCTTGTTTTCTTATTGCTATGAA 32323 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACT---GCTCTTATTTCTAA 110599 || ||||| |||||||||||||||||| || ||||| |||| ||| | ||||| || Sbjct 32322 AGAAGATTCAATTGAAGGTATTTATGATACT-TTAAA--AACTTGTGCTTTAATTTCAAA 32266 Query 110600 AAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGC 110659 | |||||||||||||| |||| ||||| ||||| | | || | |||| || Sbjct 32265 ATCAGCTGGAGGAATTGGTCTTCATATTCATAATATTAGAAGTACTGGTTCTTATATTGC 32206 Query 110660 AACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGC 110719 | | || ||| | || | ||| || ||||||||||| | || || ||| | ||||| Sbjct 32205 AGGTACAAATGGTACATCTAATGGTATTATTCCAATGTTACGTGTTTTTAACAATACTGC 32146 Query 110720 AAAATATGTGAATCAAGGTGG---TAAGAGAAATGGCTCATTTGCTATCTATCTCGAACC 110776 || |||||| |||||||||| ||| ||| ||| | ||||| || ||| | ||||| Sbjct 32145 AAGATATGTTGATCAAGGTGGTAATAAAAGACCTGGTGCTTTTGCAATGTATTTGGAACC 32086 Query 110777 TTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACA 110836 |||||| | ||| | ||||| | | || || | |||||||| || |||||| Sbjct 32085 ATGGCATGCTGATGTTTTTGATTATATTGATATTAGAAAAAATCATGGTAAAGAAGAAAT 32026 Query 110837 AAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 |||||| | ||||||||| ||| | |||||||| |||||||| |||| | | ||| | Sbjct 32025 TAGAGCAAGAGATTTATTTGCAGCATTATGGATTTCTGATTTATTTATGAGAAGAGTTGA 31966 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCT-CCTGGTCTATCTGATGTAT 110955 | ||||||| ||||| |||| | || | | | |||||||| || ||||| | Sbjct 31965 ACAAAATGGTCAATGGTC-ATTATTTTCCCCAAATGAAGTCCCTGGTCTTTCAGATGTTT 31907 Query 110956 ATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAAC 111015 |||| | || ||||||| | || |||||||||||||||||||| || | ||| Sbjct 31906 ATGGTGATGAATTTGAAGCATTATATGAAAAATATGAAAAAGAAGGTAAAGCTGTTAAAA 31847 Query 111016 AAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACTC 111075 |||| ||||||| ||||||||| ||| | ||| ||||| |||||||| | || Sbjct 31846 CAATTAAAGCTCAAAAACTTTGGTATTCAATTTTGGAAGCACAAACAGAAACTGGTATTC 31787 Query 111076 CTTATATTTTGTATAAAGAT-CATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 | | ||| | ||||||||| ||| |||| ||| |||||||| ||| | || ||| Sbjct 31786 CATTTATGCTTTATAAAGATGCAT-GTAATAAAAAAAGTAATCAAAAAAATCTTGGTACA 31728 Query 111135 ATTAA 111139 || || Sbjct 31727 ATAAA 31723 Score = 91.5 bits (100), Expect = 3e-13 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 112581 ACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAATTCAA 112640 ||||||||| || ||||| |||||||||||||||| | | |||||| || Sbjct 31577 ACAAAAGTTGTTGTTCGTAATTTAAATAAAATTATTGATAGGAATTATTATCCAGTTATT 31518 Query 112641 AAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGATTAGCT 112700 |||||| | |||| |||| | ||||||||||||| | || || ||||| |||||| Sbjct 31517 GAAGCAAGAAATTCAAATATGAGACATAGACCAATTGCTTTAGGTGTTCAAGGTTTAGCT 31458 Query 112701 GATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACC--GTGCTAAATTCTTAA--A 112756 |||| |||||| | || | || |||||||| ||| |||||||| |||| | Sbjct 31457 GATGCTTTTATGTGTCTTCGTTTACCATTTGATTC--ACCTGAAGCTAAATTATTAAACA 31400 Query 112757 TGAAAAGATTTTCGAAACAATCTATTTCGCTGCT 112790 | ||| |||| ||||| || ||| |||||| Sbjct 31399 TTCAAATATTT--GAAACTATTTATCATGCTGCT 31368 >seq4 Length=1434447 Score = 132 bits (146), Expect = 1e-25 Identities = 154/204 (75%), Gaps = 4/204 (2%) Strand=Plus/Minus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 ||||||| | || ||||| ||| |||||||| | ||||| || || |||||||||| Sbjct 669260 GACATTTAATGGATGATGATCCAGTTTTGTTCAATCGTCAACCTTCTCTACATAAAATGT 669201 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTAT-CTGGATT-GACATTTCGATTAAATGTAAG 305424 |||||||||||||| ||| |||| |||| | ||| |||||| |||||||| || Sbjct 669200 CTATGATGGCTCATCGAGTAAAAG--TTATGCCATATTCTACATTTAGATTAAATTTATC 669143 Query 305425 TGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCA 305484 || | | ||||||||||| ||||||||||| |||||||||||| | || || || || Sbjct 669142 TGTCACTTCTCCTTATAATGCCGATTTTGATGGTGATGAAATGAATTTACACGTTCCACA 669083 Query 305485 ATCAAAGGTTACAATGACTGAATT 305508 || | | |||| | ||||||| Sbjct 669082 GTCCGAAGAGACAAGGGCTGAATT 669059 >seq14 Length=670130 Score = 122 bits (134), Expect = 2e-22 Identities = 383/588 (65%), Gaps = 19/588 (3%) Strand=Plus/Plus Query 131431 CCTATTTCCAATTAAACATCACGATGTTTTCGATATGTATAAGAAATCTGTTGCGGCCTT 131490 ||| || |||||||| ||||| | | | |||||||| || ||| || | || Sbjct 577724 CCTCTTCCCAATTAAGTTCCACGAGATCTGGCAAATGTATAAAAAGGCTGAAGCATCTTT 577783 Query 131491 CTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACCTT 131550 |||||||| |||||| || ||| | | |||||||||| |||||||||||| ||| ||| Sbjct 577784 CTGGACTGCTGAAGAAATTGATTTAAGTAAAGATATTGGTGATTGGGAAAA--TAAGCTT 577841 Query 131551 GAATGAAAAAGA------TTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGATGG 131604 ||| || | || |||| |||| || | || || ||||| | ||||| Sbjct 577842 -AATAAAGATGAGCGTTTTTTTATTTCACGCGTCTTAGCCTTTTTCGCTGCTTCAGATGG 577900 Query 131605 CATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA--GAAATTGATATTCCTGAAGTA 131662 ||||||| |||||| | ||| || || ||| || || | | || |||| Sbjct 577901 TATTGTTAACGAAAATTTAGTTGAAAACTT--TTCGGCTGAGGTTCAAACACCAGAAGCT 577958 Query 131663 ACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATTA 131722 | | || || || ||| | | ||| ||| || |||| |||||| || Sbjct 577959 AAGTGCTTTTATGGTTTCCAAATCATGATGGAAAATATACACTCTGAGACATATTCACTA 578018 Query 131723 TTGATTGAGAGTCTTGTTAAAAATG---AAGATGATAAAAATAAATTATTTGATGCTGTA 131779 || ||||| | | ||||| || |||| | || | ||||| ||||| | Sbjct 578019 TTAATTGACACATATATTAAAGATTCTAAAGAGCGTGAATTT---TTATTCAATGCTATT 578075 Query 131780 AATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGAT 131839 | || ||||| ||||| ||||| ||||| |||||| | | ||||||| ||| | Sbjct 578076 GAAAATGTTCCTTGTATTAAGAAGAAGGCAGATTGGGCTTTAAGATGGATTAGTGATAAG 578135 Query 131840 TCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTCA 131899 || ||| || | | ||||| ||||| ||| |||||||||||| || || || Sbjct 578136 GAAGCATTATTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTTGAAGGTATTTTTTTCTCT 578195 Query 131900 GGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATTG 131959 ||| ||||| |||| || ||| | || ||| | || || ||||| || || | || Sbjct 578196 GGTTCTTTCGCATCTATTTTCTGGTTAAAAAAGAGAGGTTTAATGCCAGGCCTTACTTTT 578255 Query 131960 TCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGCT 132007 || ||| |||| |||| | ||||||| | || ||||| |||||| Sbjct 578256 TCTAATGAATTGATCTGTCGTGATGAAGGTCTTCACACTGATTTTGCT 578303 >seq25 Length=284566 Score = 87.8 bits (96), Expect = 4e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAA 305464 || ||| |||| |||| | ||| |||||| ||||||||||| ||||||||||| |||||| Sbjct 83940 ACTTTTAGATTTAATGAATGTGTTTGTACACCTTATAATGCTGATTTTGATGGTGATGAA 83999 Query 305465 ATGAATATGCATGTACCTCAA 305485 |||||| | ||| |||| ||| Sbjct 84000 ATGAATTTACATATACCACAA 84020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186810731978696