Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq14 210 2e-49 seq4 210 2e-49 seq21 105 5e-18 >seq14 Length=670130 Score = 210 bits (232), Expect = 2e-49 Identities = 417/604 (69%), Gaps = 20/604 (3%) Strand=Plus/Minus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCAC-A 43755 || ||||| ||||||||||| ||||| ||| || |||||||||||||| || |||| | Sbjct 212561 AGATTTGTTATGTTTCCAATTAAATATGGTGAAATTTGGCAAATGTACAAGAA-GCACGA 212503 Query 43756 GGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGC 43815 ||| || || ||||| |||| ||| ||||| | |||| || || | | ||| | Sbjct 212502 GGCTTCCTTCTGGACTACAGAGGAAATTGATCTTGCTAAGGATATACCTGACTGGGACAC 212443 Query 43816 --ATTAAAACCACAA-GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 | | |||| | || || | | ||||| || || ||||| |||||||| || Sbjct 212442 TAAGTTAAACGAAAATGAGAGATTCTTTATCTCAAGAGTATTGGCTTTTTTTGCAGCATC 212383 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCAATTACCAG 43931 || || | || ||||||||||| ||| || ||| || ||| |||||| | || | Sbjct 212382 TGATGGTCTTGTTAATGAAAATTTAGTTGAGAACTTTTCAGC-AGAGGTTCAAATTCCTG 212324 Query 43932 AAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACA 43991 |||| | |||| |||||||| || || | ||||||||| ||||| |||| ||| Sbjct 212323 AAGCCAAAAGTTTCTATGGGTTCCAGATCATGACAGAAAATATACATTCTGAAACTTACT 212264 Query 43992 GTCTTCTGATAGATACGTACATCAAAGATGGGCACGA--GAAGCATCGATTGT--TTAAT 44047 | | | | ||||||| ||||| | ||| | | | ||| | || | ||||| Sbjct 212263 CTGTACAGTTAGATACTTACATTAGAGA----CCCTATTGAAAAAGACTTTCTTCTTAAT 212208 Query 44048 GCGATAG-AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA 44106 || || | |||| | || || ||||| || || |||||| | | |||||||| || Sbjct 212207 GCAATTGTCAACA-TCCCATGTATCAAACAGAAGGCTGACTGGACTTTGAAATGGATTAA 212149 Query 44107 TTCAAATGA---TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 |||| | ||||| |||||| | || || |||||| | | ||||| | || Sbjct 212148 CGACGATGAAGCATTATTTGGGGAACGATTAGTTGCTTTTGCAACTATTGAAGGTGTATT 212089 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 || || ||||| ||||| |||||||||||||| || || ||||||| |||||||| || Sbjct 212088 TTTCTCTGGATCATTTGCTGCCATATTTTGGTTGAAAAAGAGAGGTTTAATGCCTGGTTT 212029 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTT 44283 || ||||| ||||| | || |||| |||||||| ||||| ||||||| || || Sbjct 212028 AACCTTTTCTAATGAACTTATCTGTCGAGATGAAGGTCTACATACAGATTTTGGATGTTT 211969 Query 44284 GTTA 44287 ||| Sbjct 211968 ATTA 211965 Score = 185 bits (204), Expect = 7e-42 Identities = 408/606 (67%), Gaps = 18/606 (3%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || |||||| | || |||||| | | || || || ||||||||||| ||||| || | Sbjct 577716 AGATTTGTCCTCTTCCCAATTAAGTTCCACGAGATCTGGCAAATGTATAAAAAGGCTGAA 577775 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG----AT 43812 || || || ||||| || |||||| ||||||| | |||||| | | ||||| || Sbjct 577776 GCATCTTTCTGGACTGCTGAAGAAATTGATTTAAGTAAAGATATTGGTGATTGGGAAAAT 577835 Query 43813 TGCATTAAAACCACAAGAAAAACATTTT---ATATCTTTGGTTTTGGCGTTTTTTGCTGC 43869 |||| | |||| | | |||| || || || || || ||||| ||||| Sbjct 577836 AAGCTTAATA----AAGATGAGCGTTTTTTTATTTCACGCGTCTTAGCCTTTTTCGCTGC 577891 Query 43870 GAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACC 43929 || || || || || |||||||| ||| ||| || || |||||| ||| Sbjct 577892 TTCAGATGGTATTGTTAACGAAAATTTAGTTGAAAACTTTTCGGCTGAGGTTCAAACACC 577951 Query 43930 AGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTA 43989 |||||| || |||||||| || ||||| || |||||||| || || || | || Sbjct 577952 AGAAGCTAAGTGCTTTTATGGTTTCCAAATCATGATGGAAAATATACACTCTGAGACATA 578011 Query 43990 CAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGC 44049 || | || || || || || |||||| | ||| | || || ||||| Sbjct 578012 TTCACTATTAATTGACACATATATTAAAGATTCTAAAGAGCGTGAATTTTTATTCAATGC 578071 Query 44050 GATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109 || |||| || ||| ||||| | || ||||| ||||| | | |||||| | | Sbjct 578072 TATTGAAAATGTTCCTTGTATTAAGAAGAAGGCAGATTGGGCTTTAAGATGGATTAGTGA 578131 Query 44110 AAATGATTCTTT---TGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTT 44166 || || | || || ||||| ||||| || || || | ||| ||||| ||||| || Sbjct 578132 TAAGGAAGCATTATTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTTGAAGGTATTTTTTT 578191 Query 44167 TTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGAC 44226 || || || || || | || || |||||||| || ||||||| ||||| || | || Sbjct 578192 CTCTGGTTCTTTCGCATCTATTTTCTGGTTAAAAAAGAGAGGTTTAATGCCAGGCCTTAC 578251 Query 44227 GTTTTCAAATGAGTTAATAAGTCGTGATGAAGG-CTT-ACATTGCGATTTTGCTTGCTTG 44284 ||||| ||||| || || ||||||||||||| ||| ||| | |||||||||||||| Sbjct 578252 TTTTTCTAATGAATTGATCTGTCGTGATGAAGGTCTTCACACT--GATTTTGCTTGCTTA 578309 Query 44285 TTACTT 44290 ||| || Sbjct 578310 TTATTT 578315 >seq4 Length=1434447 Score = 210 bits (232), Expect = 2e-49 Identities = 356/512 (70%), Gaps = 14/512 (3%) Strand=Plus/Minus Query 19310 CAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTTATGGGCCAC 19369 ||| | | ||| || |||||||| | | |||||| || |||| | |||| || | Sbjct 525932 CAGGTATTATTGAAAAATTGGGAGTTCATCATGTTAAAGGTATTTTATTGCATGGTCCCC 525873 Query 19370 CGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAA---TTACTTACAAAACAAC 19426 | || || || ||||||||||| ||| || || ||||| ||| | | | | | | Sbjct 525872 CAGGAACAGGTAAGACATTAATTGCAAGACAAATTGGTAAAATGTTAAATGCTAGAGAGC 525813 Query 19427 CTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAA 19486 | ||||||||||||||||||||||| ||| |||||||| ||| || ||||||| Sbjct 525812 CA---AAAATTGTAAATGGTCCTGAAATTTTATCGAAATATGTTGGTTCTTCAGAAGAAA 525756 Query 19487 ATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTT 19546 || | || ||| ||| || ||||||| ||| | ||| | | || | | || | Sbjct 525755 ATATTAGAAATTTATTTAAAGATGCTGAAGCTGAATATAAA-GCAAAAGGTGAAGAATCT 525697 Query 19547 C-TTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTCTGGT 19605 ||| |||||||| ||| | |||||||| || || | | ||| ||||| ||| | | Sbjct 525696 GGTTTACACATTATTATATTTGATGAATTAGATTCAGTTTTTAAACAAAGGGGTAGTAGA 525637 Query 19606 GTAAATGGAGTACATG------ACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGT 19659 | ||||| | || | | ||||||||||||| | | ||||| | || ||| Sbjct 525636 GGTGATGGAACAGGTGTTGGAGATAATGTTGTCAATCAATTATTAGCAAAAATGGATGGT 525577 Query 19660 GTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGAC 19719 ||| | ||| | |||||||||||||||||||| ||||| ||| || || ||||| || Sbjct 525576 GTTGATCAATTAAATAATATTTTAGTTATTGGTATGACAAATCGAAGAGATTTAATTGAT 525517 Query 19720 AGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAA 19779 ||||||||||| || ||||| || ||||| | || |||||| ||||| |||||| Sbjct 525516 GATGCCTTATTACGTCCTGGTCGTTTTGAAATGCAAATTGAAATTTCTTTACCTGATGAA 525457 Query 19780 TGTGGACGTGTGGAAATTTTAAACATACATAC 19811 ||||||| | |||||||| | || || || Sbjct 525456 CATGGACGTTTTCAAATTTTAGAAATTCAAAC 525425 >seq21 Length=453462 Score = 105 bits (116), Expect = 5e-18 Identities = 352/544 (65%), Gaps = 19/544 (3%) Strand=Plus/Plus Query 40863 GAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGAC 40922 || |||||||| |||||||| ||||| || || | | | |||||||| || |||||| || Sbjct 131118 GAGGGTGATCTGGGTCCTGTATATGGCTTCCAATGGAGGCATTTTGGTGCTAAATAT-AC 131176 Query 40923 ACTATGTACT-CTGATTATACCAATAAAGGAATGGATCAATTACAGTGCGTTATAGATAC 40981 | ||| | | |||||||| | | || | ||||| ||| | ||||| ||| Sbjct 131177 AAATTGTGATGCGGATTATACAGGTCAGGGTGTTGATCAGTTAGCGGAAGTTATTTATAA 131236 Query 40982 GATTAAATCCGATCCCG-ATAGCCGACGTATAATATTGTGCGCGTGGAACCCAACGGACG 41040 |||||| | ||| || ||| | || || || | || ||||| || |||| Sbjct 131237 -ATTAAAAAATAACCCATATGATCGAAGAATCATTTTATCTGCCTGGAATCCTGCGGATT 131295 Query 41041 TACATTTGATGGCATTGCCACCTTGTCATTTGTTATGTCAGTTTTACGTT-----TGCAA 41095 | ||||| ||||||| |||||| |||| || ||||| ||| | ||| Sbjct 131296 TTTCAAAAATGGCTCTGCCACCATGTCATATGTTTGCACAATTTTATGTTAACTTTCCAA 131355 Query 41096 TGGTGAA----------CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAG 41145 || || || || ||| ||||| |||||||| | || ||||| ||| Sbjct 131356 AGGATAAGAAACCAGAGCTTTCTTGTGTTTTGTACCAAAGATCTTGCGATATGGGTTTAG 131415 Query 41146 GGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCA 41205 | ||||| |||||||| || |||||||| | || | |||||||| || ||| Sbjct 131416 GAGTCCCCTTTAACATTGCATCATATGCTCTTTTAACAAAAATGATTGCTCATGTTTGTG 131475 Query 41206 ATTTAAAACCTGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACA 41265 || | | |||||| ||| ||||||| | ||||||| ||| |||| | ||||| Sbjct 131476 ATATGGAGTGTGGTGATTTTATTCACACTCTTGGAGATGCACACGTTTATTTAAATCATG 131535 Query 41266 TAGAGCCGTTAACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTA 41325 | || | |||| ||||| | | ||| || || |||||||| | | ||||| Sbjct 131536 TTGATGCTTTAAAGGAACAGATATCTCGAGTGCCAAGGGAATTTCCAAAGTTGAATATTA 131595 Query 41326 AACGCGCTGTTGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACA 41385 | | || | || || |||||||| || |||||||| || | ||||||| Sbjct 131596 CAAGAAAAGTAGCTAATATAGATGATTTCAAATATGAGGATTTTGTTGTGTCAGATTACA 131655 Query 41386 ATCC 41389 |||| Sbjct 131656 ATCC 131659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455341216680