Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03-
01] 136 sequences; 24,815,695 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq12 181 1e-40
seq5 178 1e-39
seq8 159 4e-34
seq21 152 6e-32
seq14 93.3 5e-14
>seq12
Length=712717
Score = 181 bits (200), Expect = 1e-40
Identities = 163/205 (80%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || ||||| || ||||| |||||||||||||||||||||
Sbjct 151152 AATGCAGATTTTTGTTAAAACCCTTACAGGGAAGACAATTACTCTTGAGGTTGAGTCATC 151093
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | |||| ||| | || | || ||||| || |||||||||||||||||||| ||
Sbjct 151092 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 151033
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|| ||| | |||||||||||||||||| | || |||| |||||| || | ||||| ||
Sbjct 151032 ACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGTACCTTATCTGACTACAA 150973
Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||||| ||| | |||
Sbjct 150972 CATCCAAAAGGAATCAACTTTACAT 150948
>seq5
Length=1301127
Score = 178 bits (196), Expect = 1e-39
Identities = 167/213 (78%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || |||||||| || |||||||| ||||||||||| || ||||| ||||||
Sbjct 1173872 ATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGTAGAGTCATCC 1173813
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| ||| | ||| | || || ||||||||||| ||||| |||||||||||
Sbjct 1173812 GATACTATTGACAATGTTAAGTCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAA 1173753
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||| ||||||||||||||| | || |||| ||||| || | || || ||
Sbjct 1173752 CAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGATGGACGTACTTTATCTGATTACAAC 1173693
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
||||||||||||| ||| | ||| | || |||
Sbjct 1173692 ATCCAAAAGGAATCAACTTTACATTTGGTTTTG 1173660
Score = 104 bits (114), Expect = 3e-17
Identities = 95/120 (79%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573
|| |||||||| || ||| | |||||||||||||||||| | || |||| |||||| ||
Sbjct 1113322 CCACCAGACCAACAACGTTTGATTTTTGCTGGTAAGCAATTAGAAGATGGTCGTACATTA 1113263
Query 27574 GCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
| ||||| || ||||||||||||| |||||||| |||| | | ||||| ||||||
Sbjct 1113262 TCTGACTACAACATCCAAAAGGAATCTACTCTTCACTTAGTTCTCAGACTTCGTGGTGGA 1113203
>seq8
Length=1087023
Score = 159 bits (176), Expect = 4e-34
Identities = 166/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460
||| |||||| ||||| ||||| || | ||||| || || |||||||| |||||||| |
Sbjct 676917 CTACAATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATTACTCTCGAGGTTGAAT 676858
Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520
| ||| | |||| ||| | ||| | |||||||| |||||||| |||||||||||||
Sbjct 676857 CCTCTGACACTATTGACAATGTTAAGTCAAAAATTCAAGACAAGGAAGGAATTCCTCCAG 676798
Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580
|||| || | |||| ||||| ||||| ||| | || || | |||||| || | ||||
Sbjct 676797 ACCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGACGTACCTTATCTGACT 676738
Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
| || | ||||||||||||||| | ||| | || |||
Sbjct 676737 ACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTG 676700
>seq21
Length=453462
Score = 152 bits (168), Expect = 6e-32
Identities = 152/197 (77%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || |||||||||||||| || || || || || ||||||||||| || || ||
Sbjct 371524 ATGCAGATTTTTGTCAAGACGCTAACGGGTAAAACCATCACTCTTGAGGTCGAATCCAGT 371583
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| || | ||| | || | || || || |||||||| |||||||| ||||| ||
Sbjct 371584 GATACAATCGATAATGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 371643
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|| ||| |||||||||||||||| ||||| || |||| |||||| || | || || ||
Sbjct 371644 CAACGTTTAATTTTTGCTGGTAAACAACTAGAAGATGGTCGTACTTTATCTGATTACAAC 371703
Query 27586 GTCCAAAAGGAATCCAC 27602
|||||||||| || ||
Sbjct 371704 ATCCAAAAGGAGTCTAC 371720
>seq14
Length=670130
Score = 93.3 bits (102), Expect = 5e-14
Identities = 302/459 (66%), Gaps = 15/459 (3%)
Strand=Plus/Plus
Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767
|||| | | ||||| | ||||| || ||| ||||| ||||| || ||||| || |||
Sbjct 578145 TTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTTGAAGGTATTTTTTTCTCTGGTTCTTTC 578204
Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827
|||||||||||| |||||||| | || | |||||||| || | ||||| || ||
Sbjct 578205 GCATCTATTTTCTGGTTAAAAAAGAGAGGTTTAATGCCAGGCCTTACTTTTTCTAATGAA 578264
Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC--GGTTACCCTGTTCAGCCACC 64885
|||||| ||| || || || || ||| || ||||| | ||| | ||| |||
Sbjct 578265 TTGATCTGTCGTGATGAAGGTCTTCACACTGATTTTGCTTGCTTATTATTTTC--CCATT 578322
Query 64886 TCAAGGACAAACCATCACATGGGACTATAATTG---ATATAGTAAAATCGGCTGTAGAAA 64942
| ||| || | | || | ||| ||| | ||| | | | ||||||| |
Sbjct 578323 T---GGAAAATAGACCCGATCCAATTATTGTTGAAAAGATAATTACAGAGGCTGTAACTA 578379
Query 64943 TTGAAAAGGAATTCATTACTGCCGCGCTTCC-GTGTCGTCTCATCGGCATGGATGCCGAT 65001
|||| ||||||| | |||| | || ||||| | || | | | || ||| || | ||
Sbjct 578380 TTGAGAAGGAATACTTTACAGATGCTCTTCCAGCCTCAT-TACTTGGTATGAATTGCAAT 578438
Query 65002 AAGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGT-TTGGTATTAA 65060
|||| || ||| | |||| ||| || ||||| || ||| | | | |||| ||
Sbjct 578439 TTGATGTGTCAATATGTTGAATATGTTGCCGATCGTCT-TTTAGTTGCTCTAGGTAACAA 578497
Query 65061 GCCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAA 65120
| | ||| | | ||||||||||||| ||||||| || | | || ||
Sbjct 578498 GAAGATTTACAATGTTACTAATCCATTTGACTTCATGGAGAATATTTCATTAGCTGGTAA 578557
Query 65121 GACTAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159
||| |||||||| || ||||| || |||||| |||||
Sbjct 578558 GACAAACTTTTTCGAGAAGAGAGTTTCTGATTA-TCAAA 578595
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570309430472320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |