Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq12 181 1e-40 seq5 178 1e-39 seq8 159 4e-34 seq21 152 6e-32 seq14 93.3 5e-14 >seq12 Length=712717 Score = 181 bits (200), Expect = 1e-40 Identities = 163/205 (80%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || ||||| || ||||| ||||||||||||||||||||| Sbjct 151152 AATGCAGATTTTTGTTAAAACCCTTACAGGGAAGACAATTACTCTTGAGGTTGAGTCATC 151093 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | |||| ||| | || | || ||||| || |||||||||||||||||||| || Sbjct 151092 TGACACTATTGATAATGTCAAATCAAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 151033 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 || ||| | |||||||||||||||||| | || |||| |||||| || | ||||| || Sbjct 151032 ACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGTACCTTATCTGACTACAA 150973 Query 27585 TGTCCAAAAGGAATCCACTCTTCAT 27609 ||||||||||||| ||| | ||| Sbjct 150972 CATCCAAAAGGAATCAACTTTACAT 150948 >seq5 Length=1301127 Score = 178 bits (196), Expect = 1e-39 Identities = 167/213 (78%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||| || |||||||| ||||||||||| || ||||| |||||| Sbjct 1173872 ATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGTAGAGTCATCC 1173813 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||| | || || ||||||||||| ||||| ||||||||||| Sbjct 1173812 GATACTATTGACAATGTTAAGTCAAAGATCCAGGACAAGGAAGGAATCCCTCCAGACCAA 1173753 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||| ||||||||||||||| | || |||| ||||| || | || || || Sbjct 1173752 CAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGATGGACGTACTTTATCTGATTACAAC 1173693 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 ||||||||||||| ||| | ||| | || ||| Sbjct 1173692 ATCCAAAAGGAATCAACTTTACATTTGGTTTTG 1173660 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 27514 CCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTA 27573 || |||||||| || ||| | |||||||||||||||||| | || |||| |||||| || Sbjct 1113322 CCACCAGACCAACAACGTTTGATTTTTGCTGGTAAGCAATTAGAAGATGGTCGTACATTA 1113263 Query 27574 GCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | ||||| || ||||||||||||| |||||||| |||| | | ||||| |||||| Sbjct 1113262 TCTGACTACAACATCCAAAAGGAATCTACTCTTCACTTAGTTCTCAGACTTCGTGGTGGA 1113203 >seq8 Length=1087023 Score = 159 bits (176), Expect = 4e-34 Identities = 166/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27401 CTATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 ||| |||||| ||||| ||||| || | ||||| || || |||||||| |||||||| | Sbjct 676917 CTACAATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATTACTCTCGAGGTTGAAT 676858 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | ||| | |||| ||| | ||| | |||||||| |||||||| ||||||||||||| Sbjct 676857 CCTCTGACACTATTGACAATGTTAAGTCAAAAATTCAAGACAAGGAAGGAATTCCTCCAG 676798 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 |||| || | |||| ||||| ||||| ||| | || || | |||||| || | |||| Sbjct 676797 ACCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGACGTACCTTATCTGACT 676738 Query 27581 ATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | || | ||||||||||||||| | ||| | || ||| Sbjct 676737 ACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTG 676700 >seq21 Length=453462 Score = 152 bits (168), Expect = 6e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || |||||||||||||| || || || || || ||||||||||| || || || Sbjct 371524 ATGCAGATTTTTGTCAAGACGCTAACGGGTAAAACCATCACTCTTGAGGTCGAATCCAGT 371583 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| | || | || || || |||||||| |||||||| ||||| || Sbjct 371584 GATACAATCGATAATGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCCCCAGATCAA 371643 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||| |||||||||||||||| ||||| || |||| |||||| || | || || || Sbjct 371644 CAACGTTTAATTTTTGCTGGTAAACAACTAGAAGATGGTCGTACTTTATCTGATTACAAC 371703 Query 27586 GTCCAAAAGGAATCCAC 27602 |||||||||| || || Sbjct 371704 ATCCAAAAGGAGTCTAC 371720 >seq14 Length=670130 Score = 93.3 bits (102), Expect = 5e-14 Identities = 302/459 (66%), Gaps = 15/459 (3%) Strand=Plus/Plus Query 64708 TTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTC 64767 |||| | | ||||| | ||||| || ||| ||||| ||||| || ||||| || ||| Sbjct 578145 TTTGCTGAACGTCTTGTTGCTTTCGCTGCTGTTGAAGGTATTTTTTTCTCTGGTTCTTTC 578204 Query 64768 TGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAG 64827 |||||||||||| |||||||| | || | |||||||| || | ||||| || || Sbjct 578205 GCATCTATTTTCTGGTTAAAAAAGAGAGGTTTAATGCCAGGCCTTACTTTTTCTAATGAA 578264 Query 64828 CTGATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGC--GGTTACCCTGTTCAGCCACC 64885 |||||| ||| || || || || ||| || ||||| | ||| | ||| ||| Sbjct 578265 TTGATCTGTCGTGATGAAGGTCTTCACACTGATTTTGCTTGCTTATTATTTTC--CCATT 578322 Query 64886 TCAAGGACAAACCATCACATGGGACTATAATTG---ATATAGTAAAATCGGCTGTAGAAA 64942 | ||| || | | || | ||| ||| | ||| | | | ||||||| | Sbjct 578323 T---GGAAAATAGACCCGATCCAATTATTGTTGAAAAGATAATTACAGAGGCTGTAACTA 578379 Query 64943 TTGAAAAGGAATTCATTACTGCCGCGCTTCC-GTGTCGTCTCATCGGCATGGATGCCGAT 65001 |||| ||||||| | |||| | || ||||| | || | | | || ||| || | || Sbjct 578380 TTGAGAAGGAATACTTTACAGATGCTCTTCCAGCCTCAT-TACTTGGTATGAATTGCAAT 578438 Query 65002 AAGATGAAACAGTATATCGAATTTGTAGCAGATCGCCTGCTTACTCAGT-TTGGTATTAA 65060 |||| || ||| | |||| ||| || ||||| || ||| | | | |||| || Sbjct 578439 TTGATGTGTCAATATGTTGAATATGTTGCCGATCGTCT-TTTAGTTGCTCTAGGTAACAA 578497 Query 65061 GCCCTACTGGAATTCTTCAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAA 65120 | | ||| | | ||||||||||||| ||||||| || | | || || Sbjct 578498 GAAGATTTACAATGTTACTAATCCATTTGACTTCATGGAGAATATTTCATTAGCTGGTAA 578557 Query 65121 GACTAACTTTTTTGAAAAGAGGGTAGGTGATTACTCAAA 65159 ||| |||||||| || ||||| || |||||| ||||| Sbjct 578558 GACAAACTTTTTCGAGAAGAGAGTTTCTGATTA-TCAAA 578595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570309430472320