Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq8 134 9e-27 seq21 129 4e-25 seq5 123 2e-23 seq12 98.7 6e-16 >seq8 Length=1087023 Score = 134 bits (148), Expect = 9e-27 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| |||||||| | |||| |||||||||||||| || || || Sbjct 676686 CCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGAT 676745 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || ||||||| | ||||||||||||||| ||||| | |||||||| || || Sbjct 676746 AAGGTACGTCCGTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGAGGA 676805 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||||||| ||| ||||| ||||| | ||| ||||| | || || Sbjct 676806 ATTCCTTCCTTGTCT-TGAATTTTTGACTTAACATTGTCAATAGTGTCAGAGGATTCAAC 676864 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | || || ||||||||||| || ||||| || || |||||||| Sbjct 676865 CTCGAGAGTAATGGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCAT 676912 >seq21 Length=453462 Score = 129 bits (142), Expect = 4e-25 Identities = 146/193 (76%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34515 CTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAA 34574 ||||||||| ||||| ||||| || | || || | ||||| ||||||||||| ||||| Sbjct 371715 CTCCTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCTAGTTGTTTACCAGCAAA 371656 Query 34575 TATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGA 34634 |||||||| ||||| || || || | ||| ||||||||| |||| |||| |||||| Sbjct 371655 AATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGATC-TTTGATTTAACAT 371597 Query 34635 TA-AAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCA 34693 || ||||| || | || || || | || || |||||||| |||| ||| || | Sbjct 371596 TATCGATTGTATCACTGGATTCGACCTCAAGAGTGATGGTTTTACCCGTTAGCGTCTTGA 371537 Query 34694 CAAAAATCTGCAT 34706 ||||||||||||| Sbjct 371536 CAAAAATCTGCAT 371524 >seq5 Length=1301127 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| |||||||| | ||| |||||||| ||||| ||||| || Sbjct 1173646 CCACCTCTTAATCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGAT 1173705 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | ||||| | ||| ||||| ||||| |||||||| |||||||| || || Sbjct 1173706 AAAGTACGTCCATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGGG 1173765 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| |||||||| ||||||| | ||||| | ||| || || ||| || Sbjct 1173766 ATTCCTTCCTTGTCCTGGATCTTT-GACTTAACATTGTCAATAGTATCGGATGACTCTAC 1173824 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 || | ||| || || |||||||| | ||||| |||||||||||||| ||| Sbjct 1173825 CTCGAGGGTAATAGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCATCTTG 1173876 >seq12 Length=712717 Score = 98.7 bits (108), Expect = 6e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557 |||||||| | ||| |||||||| ||||| || || || | || || | ||||| Sbjct 150943 ACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAGTCAGATAAGGTACGGCCATCTTCC 151002 Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTG 34617 | ||| ||||| ||||| || ||||| ||||| || || || | ||||||||| ||| Sbjct 151003 AATTGCTTACCAGCAAAAATCAAACGTTGTTGATCTGGAGGAATTCCCTCCTTATCTTGA 151062 Query 34618 ATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTT 34676 |||||| | ||| || || ||| ||||| ||| || || | || || || || Sbjct 151063 ATCTTT-GATTTGACATTATCAATAGTGTCAGATGACTCAACCTCAAGAGTAATTGTCTT 151121 Query 34677 ACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 || || | ||||| |||||||||||||| || Sbjct 151122 CCCTGTAAGGGTTTTAACAAAAATCTGCATTTT 151154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729078335688