Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq8 102 6e-17 seq21 95.1 9e-15 seq12 95.1 9e-15 seq5 95.1 9e-15 >seq8 Length=1087023 Score = 102 bits (112), Expect = 6e-17 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 27786 TAAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAG 27845 || |||||| || || || ||||| | || || ||| ||||| | || || ||| Sbjct 676916 TACAATGCAGATCTTCGTCAAAACCTTGACCGGTAAAACCATTACTCTCGAGGTTGAATC 676857 Query 27846 CACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATG 27903 | | ||| | | ||||| || || |||||| ||||| ||||| |||| Sbjct 676856 CTCTGACACTATTGACAAT--GTTAAGTCAAAAATTCAAGACAAGGAAGGAATTCCTCCA 676799 Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || || ||| | ||||| |||||||| |||||||| || |||| ||| | ||| || || Sbjct 676798 GACCAACAAAGATTAATCTTTGCCGGTAAACAATTAGAAGACGGACGTACCTTATCTGAC 676739 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||||||| ||||| || |||||| |||||||||||| Sbjct 676738 TACAACATTCAAAAGGAATCCACTTTACATTTGGTTTTG 676700 >seq21 Length=453462 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||| || || || || || ||| || || |||| |||||| || Sbjct 371524 ATGCAGATTTTTGTCAAGACGCTAACGGGTAAAACCATCACTCTTGAGGTCGAATCCAGT 371583 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || |||||||| || ||| ||| || ||||| ||||| |||| | Sbjct 371584 GA-----TACAATCGATAATGTTAAATCAAAGATCCAAGACAAGGAAGGAATTCCCCCAG 371638 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||||||||| || |||||| | || || | || | || || |||| Sbjct 371639 ATCAACAACGTTTAATTTTTGCTGGTAAACAACTAGAAGATGGTCGTACTTTATCTGATT 371698 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 ||||||||||||| ||| || || || |||||||| Sbjct 371699 ACAACATCCAAAAGGAGTCTACCTTACACTTGGTTTT 371735 >seq12 Length=712717 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 |||||||| |||||||| ||||| ||||| ||||| ||||| |||| || || Sbjct 151154 AAAATGCAGATTTTTGTTAAAACCCTTACAGGGAAGACAATTACTCTTGAGGTTGAGTCA 151095 Query 27847 ACCGACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | ||| | | | ||| |||||| ||| || || || || || |||| | Sbjct 151094 TCTGACACTATTGATAAT--GTCAAATCAAAGATTCAAGATAAGGAGGGAATTCCTCCAG 151037 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| || |||||||| || || |||||||| || | || | ||| || || | Sbjct 151036 ATCAACAACGTTTGATTTTTGCTGGTAAGCAATTGGAAGATGGCCGTACCTTATCTGACT 150977 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 ||||||||||||| || ||||| ||||||||| Sbjct 150976 ACAACATCCAAAAGGAATCAACTTTACATTTGGTT 150942 >seq5 Length=1301127 Score = 95.1 bits (104), Expect = 9e-15 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| |||||||| ||||| ||||| || || |||||| | || || || Sbjct 1173875 AAGATGCAGATTTTTGTCAAAACCCTTACCGGTAAGACTATTACCCTCGAGGTAGAGTCA 1173816 Query 27847 ACCGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 |||| | || ||||| || || ||| || ||||| ||||| | || | Sbjct 1173815 TCCGATACTATTGACAAT--GTTAAGTCAAAGATCCAGGACAAGGAAGGAATCCCTCCAG 1173758 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | || ||||| ||||| ||||| || || ||||| || || | ||| | || || |||| Sbjct 1173757 ACCAACAACGTTTAATCTTTGCTGGTAAGCAATTAGAAGATGGACGTACTTTATCTGATT 1173698 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 ||||||||||||| || ||||| |||||||||||| Sbjct 1173697 ACAACATCCAAAAGGAATCAACTTTACATTTGGTTTTG 1173660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355861810158072