Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Alloascoidea_20hylecoeti_20[genbank_20GCA_5F001600815.1_202016-03- 01] 136 sequences; 24,815,695 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq8 122 2e-22 seq5 120 7e-22 seq21 114 3e-20 seq1 113 1e-19 >seq8 Length=1087023 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||||||||| ||||| | ||||| || | || || | || Sbjct 676697 TCTCAAAACCAAATGTAAAGTGGATTCCTTTTGAATGTTGTAGTCAGATAAGGTACGTCC 676756 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 ||||||| || || || || ||||| | || ||||||||| || ||||| |||||||| Sbjct 676757 GTCTTCTAATTGTTTACCGGCAAAGATTAATCTTTGTTGGTCTGGAGGAATTCCTTCCTT 676816 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 |||||| || ||| ||| ||| || || ||||| |||| ||| || || | || || Sbjct 676817 GTCTTGAATTTTTGACTTAACATTGTCAATAGTGTCAGAGGATTCAACCTCGAGAGTAAT 676876 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTA 225717 || || || ||||| ||||| | ||| | |||||| || Sbjct 676877 GGTTTTACCGGTCAAGGTTTTGACGAAGATCTGCATTGTA 676916 Score = 118 bits (130), Expect = 3e-21 Identities = 89/105 (85%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||||||||| || ||||||||||| || |||||||||||||||||||| Sbjct 697730 GAAAATTTGACCATCAGTAATGGAAATAACATTTGTTGGAATATAAGCAGAAACATCACC 697789 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||| ||||| | ||| ||||| || |||| || |||||||| Sbjct 697790 ACCTTGAGTTTCAATAACTGGTAAAGCAGTTAAAGAACCACCACC 697834 Score = 87.8 bits (96), Expect = 4e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 5022 CAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATGGTAAA 5081 |||||| | || || | ||| | ||||| ||| || |||| |||||||||||||| ||| Sbjct 698056 CAATACTTGGCTCCTTTCACTGCTTGTGCTATTGGTGAATGGTTTAGAGATAATGGAAAA 697997 Query 5082 CATGCTTTAATCATCTACGATGATTTAAGTAAACAA 5117 |||||||| || ||||| ||||||||| |||||| Sbjct 697996 CATGCTTTGATTATCTATGATGATTTATCAAAACAA 697961 >seq5 Length=1301127 Score = 120 bits (132), Expect = 7e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225498 TCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCC 225557 ||||| || | || | ||| ||||| ||||||| |||||||| | ||||| | || Sbjct 1173657 TCTCAAAACCAAATGTAAAGTTGATTCCTTTTGGATGTTGTAATCAGATAAAGTACGTCC 1173716 Query 225558 ATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTT 225617 |||||||| ||||| ||||| ||||| | ||||||||||| || || || |||||||| Sbjct 1173717 ATCTTCTAATTGCTTACCAGCAAAGATTAAACGTTGTTGGTCTGGAGGGATTCCTTCCTT 1173776 Query 225618 GTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGAT 225677 ||| ||||||||| ||| ||| || || || || || | || || || | || || Sbjct 1173777 GTCCTGGATCTTTGACTTAACATTGTCAATAGTATCGGATGACTCTACCTCGAGGGTAAT 1173836 Query 225678 CGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| || || | ||||| | || | ||||| || Sbjct 1173837 AGTCTTACCGGTAAGGGTTTTGACAAAAATCTGCATCTT 1173875 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||||||||| || || | ||| ||||| ||||| ||||||| ||||| || | || || Sbjct 1113209 ACGAAGTCTGAGAACTAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGATAATGT 1113268 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGG 225605 | |||||||||| ||||| ||||| || || | ||||||||||| || || Sbjct 1113269 ACGACCATCTTCTAATTGCTTACCAGCAAAAATCAAACGTTGTTGGTCTGGTGG 1113322 >seq21 Length=453462 Score = 114 bits (126), Expect = 3e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || ||||||| |||||||| | ||||| | ||||||||||| || || ||| Sbjct 371720 GTAGACTCCTTTTGGATGTTGTAATCAGATAAAGTACGACCATCTTCTAGTTGTTTACCA 371661 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 || || || | |||||||| || || ||||| ||||||||||||||||||||| || Sbjct 371660 GCAAAAATTAAACGTTGTTGATCTGGGGGAATTCCTTCCTTGTCTTGGATCTTTGATTTA 371601 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 ||| ||||| || || || ||| || || | ||||| || || ||||| Sbjct 371600 ACATTATCGATTGTATCACTGGATTCGACCTCAAGAGTGATGGTTTTACCCGT 371548 >seq1 Length=2214157 Score = 113 bits (124), Expect = 1e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 ||| ||||||||||| ||||| || || |||||||| || |||||||||||||||||||| Sbjct 1406048 GAAAATTTGACCATCGGTAATTGAAATGACATTTGTTGGAATATAAGCAGAAACATCACC 1405989 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 |||||||||| | ||| ||||| || |||| || |||||||| Sbjct 1405988 ACCTTGTGTTTCAATAACTGGTAAAGCGGTTAAAGAACCACCACC 1405944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192529122014384