Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20kashinagacola_20[genbank_20GCA_5F001599075.1_202016- 03-01] 23 sequences; 12,320,962 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 172 5e-38 seq3 149 6e-31 seq14 84.2 2e-11 >seq5 Length=915096 Score = 172 bits (190), Expect = 5e-38 Identities = 424/641 (66%), Gaps = 4/641 (1%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 |||||| | |||| || | ||| || ||||||| || ||||| || | || | Sbjct 39109 TTCAACTCTCTTCATGAATAAATCTGGGATCCATAAGGCTGGGAACAAATCTCTAGCTCT 39168 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || || || ||| ||||||| | | || | ||| || || | || || ||||| Sbjct 39169 GATTTCTTCCTTACCGTGGTTCTTTCTAATGTCAATAAAATCAAAGATATCAGCGTGCCA 39228 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | ||| | |||||| || || |||||||| || || || ||||| ||||| | Sbjct 39229 TGGTTCAATGTACAAGGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACGTATCT 39288 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 ||| ||||||||| ||||||| | ||| || | || |||||| || | ||| || Sbjct 39289 GGCGGTGTTGTTGAACACTCTCACCATTGGAATGATACCGTTAGAGGTACCGTTAGTACC 39348 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | ||||| | |||| | ||||| | ||| || || || || || | | Sbjct 39349 AGCGATGTAAGAACCGGTAGCTCTGATATTGTGGATGTGTAACCCAATACCACCAGCGGT 39408 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || |||| || |||| |||| ||| ||||| || || || ||| ||| || || Sbjct 39409 CTTAGAAATCAGAGCACATTCCTTCAAAGTATCGTAAATCCCTTCAATGGAGTCATCCTT 39468 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || || |||||||| ||||||||||| | | || ||| | || |||| || Sbjct 39469 CATGGCAACTAAGAAACAAGAAGACATTTGTGGGTGAGGAGTACCAGCATTAAACAAAGT 39528 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 || ||||| || ||||||| | ||||| | ||| || || || || | Sbjct 39529 TGGAGACGCGTGAGTGAAGTATCTCTCAGACATCAAATTATAGGTTTCAATCACCTTTGG 39588 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCG-- 23878 || | || ||||| ||||| |||||||| | ||| | | | ||||||||||||| Sbjct 39589 GATATTATCACCGTGGATACCAATGGCGACTCTCATGGTTAAATGTTGAGGTCTCTCGGC 39648 Query 23879 ACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAG 23938 | | | | |||| ||| | || | || || | || || || ||||| || ||||| Sbjct 39649 AACCTTA--CCGTCGATTCTTAATAAGTAAGATCTTTCCAAGGTCTTAAACCCGAAATAA 39706 Query 23939 TCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 | ||| | || ||||| || | || || || || || || Sbjct 39707 TTATAACTGAAATCACGGTCATAAACGATAGCAGAGTTTAA 39747 >seq3 Length=1585198 Score = 149 bits (164), Expect = 6e-31 Identities = 578/891 (65%), Gaps = 23/891 (3%) Strand=Plus/Plus Query 57537 AGATTTGTCATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAA 57596 ||||| ||| | || || || |||||| || || ||| | |||||||| ||||| ||| Sbjct 913067 AGATTCGTCTTATTCCCAATCAAATATCACGAGATCTGGCAAATGTACAAGAAGGCCGAA 913126 Query 57597 GCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATTCC 57656 || || || ||||| | ||||||| | || | || ||||| | ||| ||| | | Sbjct 913127 GCTTCCTTCTGGACTGCCGAAGAAATTGATTTATCCAAGGACTTACACGACTGGAACAAC 913186 Query 57657 C---TCAAAGAATCTGAGAGAAATTTTAT-TAAACACGTGTTGGCGTTTTTCGCCGCATC 57712 | || || || ||| | || || | | | ||||| || || ||||| ||||| Sbjct 913187 AGATTGAATGACAACGAAAGATACTTCATCTCTAGA-GTGTTAGCCTTCTTCGCTGCATC 913245 Query 57713 CGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGA 57772 ||||||||||| || || |||||||| |||| || || ||||||||| | | || Sbjct 913246 TGATGGTATTGTCAATGAAAATTTGGTTGAAAACTTCTCTGCTGAAGTGCAAATCCCAGA 913305 Query 57773 GGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTC 57832 || | ||| || ||||| || ||| | || |||||| | || || || | || || Sbjct 913306 AGCCAAATGTTTCTACGGTTTCCAAATCATGATGGAAAACATACACTCTGAGACTTACTC 913365 Query 57833 GCTACTCATCGATACGTACGTGAAGGA--CAACGACGAGAAAC-GTAGAC-TGTTCAACG 57888 || | ||||| || ||||| ||||| ||| | ||| | | || | ||||||| Sbjct 913366 CTTATTGATCGACACTTACGTTAAGGATCCAAAG----GAAGCTGATTACTTATTCAACG 913421 Query 57889 CGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAA 57948 | || ||| || || || | ||||| || ||| | | | |||||| Sbjct 913422 CCATTGAACACATCCCATGTATTAGAGAAAAGGCTGAATGGGCCTTAAGATGGATCTCCG 913481 Query 57949 GCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCT 58008 | ||| |||| || || | | || ||||| ||||| || ||||| |||| Sbjct 913482 ATGATGAAGCCTTATTCGGTGAAAGATTGGTTGCCTTCGCTGCCGTTGAGGGTATCTTCT 913541 Query 58009 TTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGA 58068 | || || |||||| | || || ||| ||||||| | || | ||||| || | | Sbjct 913542 TCTCTGGTTCCTTTGCTTCCATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTTTAA 913601 Query 58069 CGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAA 58128 | || ||||| || || | | || || ||| | || ||||| ||||| || ||| Sbjct 913602 CTTTCTCTAACGAATTCATCTGTAGAGATGAAGGTTTACACACTGACTTTGCTTGTCTAT 913661 Query 58129 TGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCA-TCTTG--GACATTATCACCG 58185 ||| ||||||| ||| ||||| | | || ||| | ||| | || ||||||| Sbjct 913662 TGTTCTCTCAC-TTG--AATAACACTCCAGATGAAAGCATTGTTGCTAAGATCATCACCG 913718 Query 58186 AGGCGGTCGCGATCGAAAATGAG-TTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 | || || | || ||||| ||| | ||||||| ||| | || || | | ||| Sbjct 913719 AAGCTGTTGACATTGAAAA-GAGATACTTCACCGATGCCTTGCCAGTCAAGTTATTAGGT 913777 Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAA 58304 |||||| |||||| |||| | ||| |||| || || || || ||| | || | | Sbjct 913778 ATGAACTGTGATTTAATGTGTCAATACGTTGAATTCGTCGCTGATAGATTATTAGTTGCC 913837 Query 58305 CT-GATTGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTC 58363 || | ||| | || |||||| | || || || || || ||| | ||||| Sbjct 913838 CTCGGTTGTA-AGAAGATTTACAATGTTACCAACCCATTCGACTTCATGGAGAACATCTC 913896 Query 58364 GCTCGAGGGCAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAA 58414 | | || ||||| ||||| |||||||| | |||| ||| || ||||| Sbjct 913897 CTTGGCTGGTAAGACTAACTTCTTCGAAAAGAGAGTTTCCGATTACCAAAA 913947 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||||||||| || ||||| | ||||| || || ||||| | || || ||| | Sbjct 1231331 AACATGCAAATTTTTGTTAAGACCTTAACAGGTAAGACCATCACTTTAGAGGTCGAATCC 1231390 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| | || ||||||||||| | || || || Sbjct 1231391 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAT 1231450 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || ||||| || || || || |||||| || || || |||||| Sbjct 1231451 CAACAAAGATTGATCTTCGCCGGTAAGCAATTAGAAGACGGTAGAACCTTGTCCGATTAC 1231510 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| ||| | || |||| | ||| |||| || ||| Sbjct 1231511 AACATCCAAAAGGAATCCACTTTACACTTGGTCTTAAGATTGAGAGGTGGT 1231561 >seq14 Length=138463 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| | || || || || ||||| | || |||||| | || Sbjct 121010 ATGCAAATTTTCGTTAAGACCTTAACTGGTAAGACCATCACTTTAGAGGTTGAATCCTCT 120951 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | || || |||||||| | || || || || Sbjct 120950 GACACTATTGACAATGTCAAGTCTAAGATTCAAGATAAGGAAGGTATCCCACCTGATCAA 120891 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | |||| || ||||| || || || ||||| || ||| | ||||| ||| Sbjct 120890 CAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 120831 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| || | || |||| | ||| |||| || |||| Sbjct 120830 ATTCAAAAGGAATCAACCTTGCACTTGGTTTTAAGATTGAGAGGTGGTA 120782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766271842160