Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20kashinagacola_20[genbank_20GCA_5F001599075.1_202016- 03-01] 23 sequences; 12,320,962 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq3 215 4e-51 >seq3 Length=1585198 Score = 215 bits (238), Expect = 4e-51 Identities = 573/866 (66%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 ||||| || ||| |||||| ||||| || ||||| || || || | || || || || Sbjct 913947 TTTTGGTAATCGGAAACTCTCTTTTCGAAGAAGTTAGTCTTACCAGCCAAGGAGATGTTC 913888 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTAT---TTTTTACACCCTAATTCTAGT 12976 ||||| || ||||| || || | |||| | ||| || ||||| || | | | | Sbjct 913887 TCCATGAAGTCGAATGGGTTGGT--AACATT-GTAAATCTTCTTACAACCGAGGGCAACT 913831 Query 12977 AACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATT 13036 || ||||| ||||| || || || | ||| || |||||||||||||||||| |||| | Sbjct 913830 AATAATCTATCAGCGACGAATTCAACGTATTGACACATTAAATCACAGTTCATACCTAAT 913771 Query 13037 AATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACT 13096 || || || |||| || || || || | | ||||| || ||||| |||||| | | Sbjct 913770 AACTTGACTGGCAAGGCATCGGTGAAGTATCTCTTTTCAATGTCAACAGCTTCGGTGATG 913711 Query 13097 ATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCA 13156 || | | | | | || ||||| || | || |||| | ||| ||| Sbjct 913710 ATCTTAGCAACAATGCTTTCATCTGGAGTGTTATTCAAGTGAGAGAACAATAGACAAGCA 913651 Query 13157 AAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGC 13216 || ||| ||| || ||||||||||||| || | ||||| || || |||| ||| ||| Sbjct 913650 AAGTCAGTGTGTAAACCTTCATCTCTACAGATGAATTCGTTAGAGAAAGTTAAACCTGGC 913591 Query 13217 ATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCT 13276 || | |||| || || | ||| || || | |||||| ||||| || || || || || Sbjct 913590 ATTAAACCTCTCTTCTTCAACCAGAAGATGGAAGCAAAGGAACCAGAGAAGAAGATACCC 913531 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACC--ATACGTACTATTTTTACTCTCTATCC 13334 ||||| || || || || | ||| |||||||| ||| | || | | | |||| Sbjct 913530 TCAACGGCAGCGAAGGCAACCAATCTTTCACCGAATAAG-GCT-TCATCATCGGAGATCC 913473 Query 13335 ACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATA 13394 | || |||||| | || |||| | ||| || || | ||| || ||||| |||| Sbjct 913472 ATCTTAAGGCCCATTCAGCCTTTTCTCTAATACATGGGATGTGTTCAATGGCGTTGAATA 913413 Query 13395 AATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTG 13454 | |||| |||||| || || ||||| || ||||||||| || | || | Sbjct 913412 AGTAATCAGCTTCCTTTGGATCCTTAACGTAAGTGTCGATCAATAAGGAGTAAGTCTCAG 913353 Query 13455 AATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAA 13514 | || || ||||||||| ||||||||||| || |||||| | || |||| | || | Sbjct 913352 AGTGTATGTTTTCCATCATGATTTGGAAACCGTAGAAACATTTGGCTTCTGGGATTTGCA 913293 Query 13515 CTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaa 13574 |||| | | || |||| | || ||||| || || || || ||| ||||| || | Sbjct 913292 CTTCAGCAGAGAAGTTTTCAACCAAATTTTCATTGACAATACCATCAGATGCAGCGAAGA 913233 Query 13575 aaGCAAGTATGTGCT-TA---ATAAAttttttttCGTTTTCTGACAA---CTTTAACCAA 13627 | || | | || || || || | | ||||||| || ||| || ||| Sbjct 913232 AGGCTAACA----CTCTAGAGATGAAGTATCTTTCGTTGTCATTCAATCTGTTGTTCCAG 913177 Query 13628 TCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTC 13687 || | || || || |||||||| | || || | ||||| || ||||| | |||||| Sbjct 913176 TCGTGTAAGTCCTTGGATAAATCAATTTCTTCGGCAGTCCAGAAGGAAGCTTCGGCCTTC 913117 Query 13688 TTATACATCATCCATATATCCTTATA 13713 || ||||| ||| || || | ||| Sbjct 913116 TTGTACATTTGCCAGATCTCGTGATA 913091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982279190246