Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20kashinagacola_20[genbank_20GCA_5F001599075.1_202016- 03-01] 23 sequences; 12,320,962 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 214 4e-50 seq14 145 2e-29 seq5 113 1e-19 >seq3 Length=1585198 Score = 214 bits (236), Expect = 4e-50 Identities = 418/607 (69%), Gaps = 22/607 (4%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 ||||| || |||| ||||| | || || || ||| |||||||| |||||| Sbjct 913067 AGATTCGTCTTATTCCCAATCAAATATCACGAGATCTGGCAAATGTACAAGAAGGCCGAA 913126 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAA- 268818 ||||| || ||||||| |||||| | ||| | || | |||||| || ||||| || Sbjct 913127 GCTTCCTTCTGGACTGCCGAAGAAATTGATTTATCCAAGGACTTACACGACTGGAACAAC 913186 Query 268819 ---TTTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTT-GCGTTTTTTGCAGTTA 268874 || || || | |||||| || || ||| | | | || || || || || | Sbjct 913187 AGATTGAATGACA-ACGAAAGATACTTCATCTCT-AGAGTGTTAGCCTTCTTCGCTGCAT 913244 Query 268875 GTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTG 268934 ||||||||| || || |||||| | || || || |||| | || || || || || | Sbjct 913245 CTGATGGTATTGTCAATGAAAATTTGGTTGAAAACTTCTCTGCTGAAGTGCAAATCCCAG 913304 Query 268935 AAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACA 268994 |||||| |||||| ||||| ||||| || || ||||| || || || |||| ||| Sbjct 913305 AAGCCAAATGTTTCTACGGTTTCCAAATCATGATGGAAAACATACACTCTGAGACTTACT 913364 Query 268995 GTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAA-GACTATTTTCTTCT 269053 |||| || || ||||| | | ||| | ||| ||| || || || ||| Sbjct 913365 CCTTATTGATCGACACTTACGTTAAGGAT-----CCAAAGGAAGCTGATTACTTA-TTCA 913418 Query 269054 ATGA----GAACT-ATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA 269108 | | |||| || ||| | ||| |||| |||||||||| | | |||||| Sbjct 913419 ACGCCATTGAACACATCCCATGTATTAGAGAAAAGGCTGAATGGGCCTTAAGATGGATCT 913478 Query 269109 ACGATAGCGC-GCCTTA--CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATAT 269165 |||| | |||||| ||| ||||| || ||||| || || || || || ||||| | Sbjct 913479 CCGATGATGAAGCCTTATTCGGTGAAAGATTGGTTGCCTTCGCTGCCGTTGAGGGTATCT 913538 Query 269166 TCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGAT 269225 |||| || || || ||||| | ||||| ||||||||||| ||||| | |||||||| | Sbjct 913539 TCTTCTCTGGTTCCTTTGCTTCCATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAGGTT 913598 Query 269226 TAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTT 269285 ||||||||||||||||||| || | || || |||||||||||| ||||| |||||| Sbjct 913599 TAACTTTCTCTAACGAATTCATCTGTAGAGATGAAGGTTTACACACTGACTTTGCTTGTC 913658 Query 269286 TATTATT 269292 |||| || Sbjct 913659 TATTGTT 913665 Score = 118 bits (130), Expect = 2e-21 Identities = 151/208 (73%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 ||||| || ||||| || || || || || || || | |||||||||||||||| ||| Sbjct 1231536 TGTAAAGTGGATTCCTTTTGGATGTTGTAATCGGACAAGGTTCTACCGTCTTCTAATTGC 1231477 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || || || || | || ||||||||||| || || ||||| || || || ||||| Sbjct 1231476 TTACCGGCGAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTGTCTTGGATCTTG 1231417 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || | ||| ||||||| || || |||||||| || Sbjct 1231416 GACTTGACATTGTCAATAGTGTCAGAGGATTCGACCTCTAAAGTGATGGTCTTACCTGTT 1231357 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGT 104564 | || || ||||| || ||||| |||| Sbjct 1231356 AAGGTCTTAACAAAAATTTGCATGTTGT 1231329 >seq14 Length=138463 Score = 145 bits (160), Expect = 2e-29 Identities = 154/203 (76%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || ||||| || || ||||||| ||||||||| ||||||| ||| Sbjct 120808 TGCAAGGTTGATTCCTTTTGAATGTTGTAATCAGATAAAGTTCTACCATCTTCTAATTGC 120867 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| |||| || ||||||||||| || || ||||| ||||| |||||||| Sbjct 120868 TTACCAGCAAAGATTAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTGAATCTTA 120927 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || | ||| ||||||| || || ||||||||||| Sbjct 120928 GACTTGACATTGTCAATAGTGTCAGAGGATTCAACCTCTAAAGTGATGGTCTTACCAGTT 120987 Query 104537 AGTGTTTTTACAAATATCTGCAT 104559 | || || || || || ||||| Sbjct 120988 AAGGTCTTAACGAAAATTTGCAT 121010 >seq5 Length=915096 Score = 113 bits (124), Expect = 1e-19 Identities = 125/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||||| || | || | || || || ||||| || || || || ||||| || Sbjct 587566 CCACCTCTTAATCTCAAGACCAAGTGCAAGGTGGATTCCTTTTGGATGTTGTAGTCGGAA 587625 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 ||||||||||| ||||||| ||| || |||||||| |||| || |||||||| || || Sbjct 587626 AGAGTTCTACCATCTTCTAATTGCTTACCAGCAAAGATTAATCTTTGTTGATCTGGTGGG 587685 Query 104453 ATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATC 104499 || ||||| || || || || || | ||| ||||| || | |||||| Sbjct 587686 ATACCTTCCTTGTCTTGGATTTTAGATTTGACATTGTCAATGGTATC 587732 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398060697284