Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20kashinagacola_20[genbank_20GCA_5F001599075.1_202016- 03-01] 23 sequences; 12,320,962 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 163 7e-35 seq10 147 5e-30 seq1 107 5e-18 seq11 96.9 8e-15 >seq5 Length=915096 Score = 163 bits (180), Expect = 7e-35 Identities = 436/657 (66%), Gaps = 11/657 (2%) Strand=Plus/Minus Query 110510 ACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAACGATGATTCTATTGAAGGTATTTATG 110568 |||| || ||||||| |||||| | | || || ||||| || |||||||| ||||| | Sbjct 39499 ACAAATGTCTTCTTG-TTTCTTAGTTGCCATGAAGGATGACTCCATTGAAGGGATTTACG 39441 Query 110569 ATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTC 110628 || || | || ||| |||||| |||||||| | | |||| || ||||| | ||| | | Sbjct 39440 ATACTTTGAAGGAATGTGCTCTGATTTCTAAGACCGCTGGTGGTATTGGGTTACACATCC 39381 Query 110629 ATGATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTG 110688 | |||| | | | || | | ||||| | || ||| | || | || | Sbjct 39380 ACAATATCAGAGCTACCGGTTCTTACATCGCTGGTACTAACGGTACCTCTAACGGTATCA 39321 Query 110689 TTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGT---AAGA 110745 |||||||| | ||||| |||||| |||| || | ||| || ||||||||||| |||| Sbjct 39320 TTCCAATGGTGAGAGTGTTCAACAACACCGCCAGATACGTTGATCAAGGTGGTAACAAGA 39261 Query 110746 GAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAG 110805 || || | ||||| | || | ||||| ||||| | ||||| ||||| || | | Sbjct 39260 GACCAGGTGCTTTTGCCTTGTACATTGAACCATGGCACGCTGATATCTTTGATTTTATTG 39201 Query 110806 AACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGT 110865 | || | || || || || |||||| ||||| | ||||| || || | | Sbjct 39200 ACATTAGAAAGAACCACGGTAAGGAAGAAATCAGAGCTAGAGATTTGTTCCCAGCCTTAT 39141 Query 110866 GGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTC 110925 |||| |||||||||||||||| | ||| || ||||| ||| || || | | || Sbjct 39140 GGATCCCAGATTTATTCATGAAGAGAGTTGAATCTAATGGTGAATGGACT-TTGT-TCTC 39083 Query 110926 CTCATC--GTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGA 110983 | |||| |||| ||| || |||||| || || | || || ||||| | || || Sbjct 39082 CCCATCTGAAGCTCCAGGTTTAGGTGATGTCTACGGTGATGAATTCGAAGAATTGTATGA 39023 Query 110984 AAAATATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCA-GCTCAAGAACTTTGGTTCA 111042 || ||| |||| |||||| ||| | | | || || | |||||| | | |||| | Sbjct 39022 AAGATACGAAAGAGAAGGTAAGGGTAG-ATCCACTATCAAGGCTCAAAAGTTATGGTACT 38964 Query 111043 AAATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTA 111102 ||| | ||| | ||| ||| ||||| || || | || || || || ||| || Sbjct 38963 CCATCTTAGAAGCTCAAACTGAGACTGGTACCCCATTCATGTTATACAAGGATGCCTGTA 38904 Query 111103 ATCGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTGTG 111159 | ||||| || |||| ||| || || | |||||||| || ||||| |||| Sbjct 38903 ACAAGAAATCCAACCAAAAGAACTTGGGTATGATTAAGTCCTCCAACTTGTGTTGTG 38847 Score = 154 bits (170), Expect = 3e-32 Identities = 354/530 (67%), Gaps = 5/530 (1%) Strand=Plus/Plus Query 110632 ATATTCGCTCAAAAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTC 110691 |||| || || | |||| || |||||||| | || ||| |||||| |||||| || | Sbjct 152947 ATATCCGTTCTACAGGATCATATATCGCAGGTACCAATGGTACTTCAAGTGGACTGGTGC 153006 Query 110692 CAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAA---GAGAA 110748 | ||||| | ||| ||| | ||||| || ||||| |||| |||||||| |||| Sbjct 153007 CCATGTTGAAAGTTTTCGATAGTACTGCCAAGTATGTCGATCAGGGTGGTAATAAGAGAC 153066 Query 110749 ATGGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAAC 110808 || | ||| ||| ||| | ||||| |||||| ||||| |||||||||||||| | Sbjct 153067 CGGGTGCCTTTTGTATATATTTAGAACCCTGGCATGGTGATATTTTTGAATTCTTAGACC 153126 Query 110809 TTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGA 110868 | | || || || || || ||| ||||| | ||||| ||||||||| | |||| Sbjct 153127 TGAGGAAGAACCATGGTAAGGAGGAAGTTAGAGCTAGAGATTTGTTTTATGCATTATGGA 153186 Query 110869 TTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTC 110928 || | ||||| || ||| || ||||| || |||| | | | | | Sbjct 153187 TTCCTGATTTGTTTATGGAAAAAGTTCAGCGGGGTGAAGATTGGTGTTTGTTTTCCCAAG 153246 Query 110929 ATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAAT 110988 || | |||||| || ||||||| ||||| | ||||||| | || || || |||| Sbjct 153247 ATAAGTGTCCTGGACTCACTGATGTTTATGGTGAGGAGTTTGTGGCTCTATATGAGAAAT 153306 Query 110989 ATGAAAAAGAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCC 111048 ||||| ||||| || || |||| | || ||||||| || | ||| || | Sbjct 153307 ATGAACGTGAAGGTAAATTCATCAAAAAGGTTAAAGCTCAAAAATTATGGCATGCTATAC 153366 Query 111049 TTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGA-TCATATTAATCGC 111107 ||| | ||| ||| ||||| | || | | | | || || || |||| ||| Sbjct 153367 TTGTCGCCCAAACTGAGACTGGTAACCCATTTCTACTATACAAGGATTCAT-GCAATAAG 153425 Query 111108 AAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGCTG 111157 ||||| ||||| | |||||| ||||| || |||||| ||| || || || Sbjct 153426 AAATCCAATCAGAAGAATTTGGGAACTATCAAGTCTTCTAACTTATGTTG 153475 >seq10 Length=448533 Score = 147 bits (162), Expect = 5e-30 Identities = 474/726 (65%), Gaps = 42/726 (6%) Strand=Plus/Minus Query 167248 CACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTAC 167307 |||| |||||||| |||||| ||||||||| ||||| |||| ||||||||||| || Sbjct 393128 CACCTGCATTATCAAATTCACCACAATAATTTGGAGCTGAGAATATAGTAACTAATTGAC 393069 Query 167308 GATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCAC-GTATTACAAGTTCA 167366 | || || ||||||||||||||||| ||||||| ||| || | | | ||| | || Sbjct 393068 GTTTACTGAAAAATTCATAACCATCTTCCACAACTTGATGAGCTCTGCAAATCAAATCCA 393009 Query 167367 ACTCCTAtttttttAAGAAAATTAGTTAAAGCAC--GTAATCCAAATTTATAACTACAAC 167424 || | ||||| | |||| | | ||| ||| | ||||||| | | | || Sbjct 393008 TATCATGTTTTTGT---AAAAATCTTGAAACCACATCTGGTCCAAATGTGAATGAAACAC 392952 Query 167425 CTCTTTCAGATTCAGAATAATAATCAATATCATGCGATGGATCCGCCCAAAGAAGATCGC 167484 |||| ||| ||| || || ||||| | |||||| | |||||| | ||| | Sbjct 392951 CTCTATCATTTTCTGACCAACCTGTTATATCTTTATCTGGATCTGACCAAAGTAAATCAC 392892 Query 167485 ATACCAACCCCTTATCAGGGATATCAATAGGTTTTTTAATCCTATTGATATCTTCTAATT 167544 ||| || || ||| || ||||| | ||| | | | || | || | ||| | Sbjct 392891 ATAATAATCCAACATCTGGAATATCTGTTGGTCTCATCACTCTTCTAATTTGTTCCATAG 392832 Query 167545 TATTAATATCTTCAGTGATTCCACCATGAACACAAAAAGCCAATGGATTATCAATTGTTA 167604 |||| | |||| || | ||||||||| | ||| |||| || | | Sbjct 392831 TATTTAAATCTGGAGATAATCCACCATGCATTGTAAA--------GATT-----TTTTCA 392785 Query 167605 TTCCAATGGTTGCAGCAATAGACATAGTGTCAAAAACATCGATGAAACTTTTCCAGATTT 167664 | |||| |||||||||| | | | | ||| ||| | || ||||||| | || Sbjct 392784 T--CAATAATTGCAGCAATTGGTAAACAATTAAAGCAATCTGTAAACGTTTTCCAAAGTT 392727 Query 167665 TTATCGAACCACGTCGTTTGCATTCATCGTAAAAACCAT--AGTCTCTTGAGATATCAGC 167722 | || | ||||| || |||||||| ||||| |||| | ||| || | || || Sbjct 392726 TAATATTATAACGTCTCTTACATTCATCATAAAATCCATAAATTCTGTTAATTGAT--GC 392669 Query 167723 ACATTCGTGATTTCCTCTTAATAAAATTATGTTATTTNNNNNNNNNNNNNTGTAGCAAAA 167782 |||||| || || ||||| |||||| | | |||| | | | || Sbjct 392668 ACATTCATGGTTACCTCT---TAAAATGAAGAAATTTTCTGGGTATTTAATTTTGTAAGC 392612 Query 167783 TAATAACA---AAATTGTTTCTAATGATTTAACACCTCTATCAACATAATCACCTAAAAA 167839 |||||| | |||||||||||||||||| |||||||||||| |||||||| | || Sbjct 392611 TAATAAAAGGCAAATTGTTTCTAATGATTGTTTACCTCTATCAACGTAATCACCAAGGAA 392552 Query 167840 TATATATTTA--TTTTGGTTTGAAGGATTATCTAGTTTTTTAAAAATATTCAATAAATCA 167897 || ||| ||| || ||| ||| | | | | || || ||| || ||||||||| Sbjct 392551 TAAATAATTAGCTTCAGGTGGGAA--AGCACC--ATATTCGAATAATCTT-AATAAATCA 392497 Query 167898 CTAAATTGACCATGTAAATCACCTACAACCTTTA--TGGGACTTGTAGTTTTAATTAGCA 167955 | |||||||||| | |||||| |||| |||| ||| ||| || || ||| || | Sbjct 392496 TAATATTGACCATGAATATCACC-ACAAATTTTAATTGGTGCTTCTAATTCTAA-TAATA 392439 Query 167956 TTGGTT 167961 |||||| Sbjct 392438 TTGGTT 392433 >seq1 Length=1922986 Score = 107 bits (118), Expect = 5e-18 Identities = 168/238 (71%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 279857 TCTATTCCTCATTTAATGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGT 279916 ||||||||| | | | ||||| || || ||||| || | |||||| |||| ||||| Sbjct 1426608 TCTATTCCTTCTGTCCTTGATGGGTTCAAGCCTTCTCAAAGAAAGATTCTATTTGGTTGT 1426667 Query 279917 TTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAA 279976 |||||| | || ||| || ||||| || | ||||| ||||||||| | || ||| Sbjct 1426668 TTCAAACGTAATTTGACTAATGAAATCAAAGTCTCCCAGTTGGCAGGTTATATCTCTGAA 1426727 Query 279977 CATGCAGGTTATCATCACGGTGAAGCGTCTCTTCAAGGTG-CTATTGTAGGTCTTGCCCA 280035 || | ||||| ||||| |||||| |||| || | | || ||||| | | || || Sbjct 1426728 AATACCGGTTACCATCATGGTGAACAGTCT-TTGATGATGTCTATTATCTCCTTAGCACA 1426786 Query 280036 AGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCT 280093 |||||| | | | | || ||||| ||| || | |||||||||| ||||||||| Sbjct 1426787 AGATTTCGTCGGTGCTAATAACTTGAATGTGTTAAGACCAAATGGTGGTTTTGGTTCT 1426844 >seq11 Length=430679 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 305336 TTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTA 305395 ||||| | ||||| || || ||||||||||| ||||||||||| | |||||| || | Sbjct 153589 TTCAACCGTCAACCTTCTCTTCATAAAATGTCCATGATGGCTCACAGAGTCAAGGTTATG 153530 Query 305396 TCTGGATTGACATTTCGATTAAAT--GTAAGTGCTTGTACGCCTTATAATGCGGATTTTG 305453 || | ||||| |||| ||| || ||| || | || ||||| || ||||| | Sbjct 153529 CCTTATTCTACATTCAGATTGAATTTGTCTGTGAC-GT-CTCCATATAACGCAGATTTCG 153472 Query 305454 ATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAATTATCAG 305513 |||| |||||||||||| | || || |||||||| | | || | |||||||||| Sbjct 153471 ATGGTGATGAAATGAATTTACACGTTCCTCAATCTTATGAAACTAGAGCTGAATTATCCC 153412 Query 305514 AAATATGTTCTGTATCAAAACTTATCATTTCTCC 305547 |||| ||| | || || || || ||||||| Sbjct 153411 AAATTTGTGCAGTTCCATTACAAATTGTTTCTCC 153378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812450261103