Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20kashinagacola_20[genbank_20GCA_5F001599075.1_202016- 03-01] 23 sequences; 12,320,962 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 158 1e-33 seq12 120 2e-22 seq4 98.7 8e-16 >seq3 Length=1585198 Score = 158 bits (174), Expect = 1e-33 Identities = 398/601 (66%), Gaps = 28/601 (5%) Strand=Plus/Plus Query 43697 AGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAG 43756 || || ||| | || ||||| ||||||| || || |||||||||||||| || || | Sbjct 913067 AGATTCGTCTTATTCCCAATCAAATATCACGAGATCTGGCAAATGTACAAGAAGGCCGAA 913126 Query 43757 GCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTA--------GCACATT 43808 || || || ||||| || |||||| ||||||| | || |||||| | ||| Sbjct 913127 GCTTCCTTCTGGACTGCCGAAGAAATTGATTTATCCAAGGACTTACACGACTGGAACAAC 913186 Query 43809 GGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTG 43868 ||||| || | ||| |||| | | || || ||| || || || || || |||| Sbjct 913187 AGATTGAATGACAAC-----GAAAGATACTTCATCTCTAGAGTGTTAGCCTTCTTCGCTG 913241 Query 43869 CGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTAC 43928 | || || || |||||||||||||||||| || | ||||| ||| | | Sbjct 913242 CATCTGATGGTATTGTCAATGAAAATTTGGTTGAAAACTTCTCTGCTGAAGTGCAAATCC 913301 Query 43929 CAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGT 43988 ||||||| |||||| || || || ||||| || ||||| || || || || | | Sbjct 913302 CAGAAGCCAAATGTTTCTACGGTTTCCAAATCATGATGGAAAACATACACTCTGAGACTT 913361 Query 43989 ACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC--ATCGATTGTTTAA 44046 || | |||| || || ||| | || ||| || ||||| || || || || Sbjct 913362 ACTCCTTATTGATCGACACTTACGTTAAGGAT--CCAAAGGAAGCTGATTACTTATTCAA 913419 Query 44047 TGCGATAGAA-ACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAA 44105 || || ||| ||| | || |||| | | || || || |||||| | | |||||| Sbjct 913420 CGCCATTGAACACA-TCCCATGTATTAGAGAAAAGGCTGAATGGGCCTTAAGATGGAT-- 913476 Query 44106 ATTCAAATGAT------TCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCA 44159 || ||||| | || || ||| || | || || || || | || || || | Sbjct 913477 -CTCCGATGATGAAGCCTTATTCGGTGAAAGATTGGTTGCCTTCGCTGCCGTTGAGGGTA 913535 Query 44160 TTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTG 44219 | ||||| || || || ||||| |||| || ||||| ||||| ||||||| ||||| | Sbjct 913536 TCTTCTTCTCTGGTTCCTTTGCTTCCATCTTCTGGTTGAAGAAGAGAGGTTTAATGCCAG 913595 Query 44220 GGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTT 44279 | || || || || || || || || || | |||||||| ||||| || ||||||| Sbjct 913596 GTTTAACTTTCTCTAACGAATTCATCTGTAGAGATGAAGGTTTACACACTGACTTTGCTT 913655 Query 44280 G 44280 | Sbjct 913656 G 913656 >seq12 Length=324105 Score = 120 bits (132), Expect = 2e-22 Identities = 424/657 (65%), Gaps = 28/657 (4%) Strand=Plus/Plus Query 40781 ATTATCAGAAAGAGGAGTGCACATTTGGAATGCGCACAGTTCTAAAACATATTT-GTCTA 40839 |||||||| ||| ||| | |||||| ||| || | |||| | |||||| | || Sbjct 266647 ATTATCAGCTCAAGGTGTGAAAATTTGGGATGGTAACGGATCTAGAGAATATTTAGACTC 266706 Query 40840 GCATAGGATTACAAGATAGGGATGAAGGTGATCTTGGTCCTGTTTATGGATTTCAGTCGC 40899 |||||||| || || ||||| ||| | ||||| ||||||||||| || | | Sbjct 266707 TT-TAGGATTAACTGAAAGAAGAGAAGGCGATTTAGGTCCAGTTTATGGATTCCAATGGA 266765 Query 40900 GACATTTTGGAGCAAAATATGACACTATGTACT-CTGATTATACCAATAAAGGAATGGAT 40958 |||| ||||| ||| | ||| ||| ||| | ||||||| | ||| || ||| Sbjct 266766 GACACTTTGGTGCAGAGTAT-ACAGATTGTGATGCTGATTACTCTGGTAAGGGGTATGAT 266824 Query 40959 CAATTACAGTGCGTTATAGATACGATTAAATCCGATCC---CGATAGCCGACGTATAATA 41015 |||||| |||| ||||| | ||| |||| |||||| || || || Sbjct 266825 CAATTAGCTAAAATTATTGATACTTTGAAAAATAATCCATACGATAGAAGA---ATTATT 266881 Query 41016 TTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCTTGTCATTTGTTA 41075 || | || ||||| ||| | | | | |||||||| ||||| |||||| |||| Sbjct 266882 TTATCTGCATGGAATCCACCTGCATTCAAGGAAATGGCATTACCACCATGTCATGTGTTT 266941 Query 41076 TGTCAGTTTTACGT-----TTGCAAT-------GGTGAAC------TGTCATGTCAATTG 41117 ||||| || || || | ||| ||| ||| | ||||||||| || Sbjct 266942 TGTCAATTCTATGTGAACTTCCCAAAAGATGGAGGTAAACCAAGATTATCATGTCAAATG 267001 Query 41118 TATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTG 41177 ||||||||||| |||| |||||| |||| || || || || || || |||| | | Sbjct 267002 TATCAAAGATCTTGTGATATGGGATTAGGTGTGCCTTTCAATATTGCATCTTATTCATTA 267061 Query 41178 CTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAATTTGTTCACACGTTA 41237 | || || |||||||| ||| || || | |||| |||||||| ||||||| | Sbjct 267062 TTGACTTACATGATTGCTCACATTGTGGATATGGAACCAGGTGAATTCATTCACACTATG 267121 Query 41238 GGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAACAACTGACACGAAAA 41297 || ||| ||| | ||| | ||||| | || | || | ||||||| ||| || Sbjct 267122 GGTGATTCTCATGTGTACTGTGATCACGTTGATGCATTGAAAGAACAAATGAGTAGAGTG 267181 Query 41298 CCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAACATTGATGATTTTTGC 41357 |||||| |||| || | | ||||| | | ||| | || |||||||| Sbjct 267182 CCTAGAGCATTCCCTAAATTGAAGATTAAGAGAACAGTTACTGATATCGATGATTTCAAA 267241 Query 41358 ATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCCTAAAATCCACATGGACATG 41414 | |||||||| | || ||||||||||| ||| | ||| | ||| ||||| Sbjct 267242 TTTGATGATTTCGAAATTGTTGATTACAATCCTTACAAAACTATCAAGATGCACATG 267298 >seq4 Length=1369417 Score = 98.7 bits (108), Expect = 8e-16 Identities = 283/431 (66%), Gaps = 16/431 (4%) Strand=Plus/Minus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 ||||| ||||| ||| || ||||| || ||||| ||| || || ||||| | | | Sbjct 874437 TATGGACCACCTGGTACCGGTAAAACTTTGATTGCTAGACAAATTGGTAAAATGTTGAAT 874378 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | | ||||| || ||||| |||||||| || || | |||||||| ||| || Sbjct 874377 GCTAGGGAACCT---AAGATTGTTAATGGTCCAGATATGCTTTCCAAATATGTCGGTGAA 874321 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACA-AAAACGTTTAGG 19535 || |||| || | || | || || |||||||| ||| | |||| | | | Sbjct 874320 TCTGAAGGTAACATTCGTAAACTTTTCCAAGATGCTGAAGATGAATATAAAAAGA--AAG 874263 Query 19536 GCGCAAAAG-TTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAA 19594 | | | || ||| || || ||||| || | ||||||||||| | | | ||||||| Sbjct 874262 GTGAAGAATCTTCCTTACATATTATCATTTTTGATGAATTGGATTCTGTGTTCAAGCAAA 874203 Query 19595 GAGGT------TCTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAA 19648 ||||| |||| || | || || ||| | | || |||||| | | | | Sbjct 874202 GAGGTTCCAAATCTGATGGTACCGGTGTCGCTGATAACTTGGTTAATCAATTATTAGCTA 874143 Query 19649 AATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGG 19708 | | || ||||| | ||| | || |||||||| ||||| || ||||| |||||| | Sbjct 874142 AGATGGATGGTGTGGAACAATTAAACAATATTTTGGTTATCGGTATGACCAATAGAAAAG 874083 Query 19709 AATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACT 19768 | || || || || |||||||| |||| ||| | || ||| | | | |||||| | Sbjct 874082 ATTTGATCGATAGTGCCTTATTGAGACCTGGTAGATTTGAAGTGCAAGTTGAAATTCATC 874023 Query 19769 TACCCGATGAA 19779 | || |||||| Sbjct 874022 TCCCAGATGAA 874012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455888588115