Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20kashinagacola_20[genbank_20GCA_5F001599075.1_202016- 03-01] 23 sequences; 12,320,962 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5 125 8e-24 >seq5 Length=915096 Score = 125 bits (138), Expect = 8e-24 Identities = 293/440 (67%), Gaps = 4/440 (1%) Strand=Plus/Minus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 |||||| |||||| | || || | || || || ||||| |||| || ||||| Sbjct 39547 CTTCACTCACGCGTCTCCAACTTTGTTTAATGCTGGTACTCCTCACCCACAAATGTCTTC 39488 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 |||||| |||| || |||||||||||| |||||| || || ||||| || | ||||| Sbjct 39487 TTGTTTCTTAGTTGCCATGAAGGATGACTCCATTGAAGGGATTTACGATACTTTGAAGGA 39428 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAATATCCGGTC 19374 || || | || || ||| | || ||||| ||| | ||| | |||||| | | Sbjct 39427 ATGTGCTCTGATTTCTAAGACCGCTGGTGGTATTGGGTTACACATCCACAATATCAGAGC 39368 Query 19375 GAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTCCG 19434 | ||| | ||| ||| || ||||| | |||||||| | |||||| | | Sbjct 39367 TACCGGTTCTTACATCGCTGGTACTAACGGTACCTCTAACGGTATCATTCCAATGGTGAG 39308 Query 19435 CGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACG--CAAGGGCTCG 19492 || ||||||||||| ||||| ||||| | || || || ||| | || | ||| Sbjct 39307 AGTGTTCAACAACACCGCCAGATACGTTGATCAAGGTGGTAACAAGAGACCAGGTGCT-- 39250 Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 || ||| | ||| | || ||||||||||| || || | ||||| | || | | | Sbjct 39249 TTTGCCTTGTACATTGAACCATGGCACGCTGATATCTTTGATTTTATTGACATTAGAAAG 39190 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 ||||| ||| | || || || | | | || | ||| | ||||| ||||| || || Sbjct 39189 AACCACGGTAAGGAAGAAATCAGAGCTAGAGATTTGTTCCCAGCCTTATGGATCCCAGAT 39130 Query 19613 CTATTCATGGAGAAGGTTGA 19632 |||||||| ||| ||||| Sbjct 39129 TTATTCATGAAGAGAGTTGA 39110 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| ||| |||||||| || ||||| | |||||||||||| ||||| | |||||| Sbjct 37907 GTTCTCAAGTAGTACATACCGGTCTTTAAACCCTTCTTCCAACCGTAGAAGTGCATGGAA 37966 Query 78250 GACAGCTTGGCCAGACTCGG-GTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | || ||| ||| | | || | ||| || | |||||| | || || || || || | Sbjct 37967 GTCAACTTACCCATAGTTGGAGCTCT-CAAGTGGATGTTCATAGATTGAGATTGATCAAC 38025 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGT 78368 ||| ||||| | ||| || | ||| || |||| |||||||| | ||| ||||| | ||| Sbjct 38026 GTAAGCACCTCTGTCAGCAGACATATCAATGATAGACTTTTGAGAAATTTCCCAAACGGT 38085 Query 78369 C 78369 | Sbjct 38086 C 38086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 329/516 (64%), Gaps = 0/516 (0%) Strand=Plus/Plus Query 79372 TCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGC 79431 ||||| ||| |||||| | || |||||||| | ||| | ||| | || | | Sbjct 39110 TCAACTCTCTTCATGAATAAATCTGGGATCCATAAGGCTGGGAACAAATCTCTAGCTCTG 39169 Query 79432 ATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCAC 79491 || || || | || |||||| | | || | ||| || | ||| || |||||||| Sbjct 39170 ATTTCTTCCTTACCGTGGTTCTTTCTAATGTCAATAAAATCAAAGATATCAGCGTGCCAT 39229 Query 79492 GGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGG 79551 || || | || | ||| || | ||| | |||| || || || | ||||| | | Sbjct 39230 GGTTCAATGTACAAGGCAAAAGCACCTGGTCTCTTGTTACCACCTTGATCAACGTATCTG 39289 Query 79552 GCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCG 79611 || ||||||||||| |||| | ||| || | ||| |||| | | ||||| || || Sbjct 39290 GCGGTGTTGTTGAACACTCTCACCATTGGAATGATACCGTTAGAGGTACCGTTAGTACCA 39349 Query 79612 TTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTCCGATGCCCCCGGACCAC 79671 ||| | |||| | || | || || | ||| | || || || || | | Sbjct 39350 GCGATGTAAGAACCGGTAGCTCTGATATTGTGGATGTGTAACCCAATACCACCAGCGGTC 39409 Query 79672 TTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTC 79731 || || || | || || ||||| | || ||||| || || || || ||||| |||||| Sbjct 39410 TTAGAAATCAGAGCACATTCCTTCAAAGTATCGTAAATCCCTTCAATGGAGTCATCCTTC 39469 Query 79732 ATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTC 79791 || || || | ||| || ||||| ||||||| ||||| || || || | || Sbjct 39470 ATGGCAACTAAGAAACAAGAAGACATTTGTGGGTGAGGAGTACCAGCATTAAACAAAGTT 39529 Query 79792 GGCGTCGCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGACGCGCGGG 79851 || | |||||| |||||| | | | ||||| || || || || | || ||| Sbjct 39530 GGAGACGCGTGAGTGAAGTATCTCTCAGACATCAAATTATAGGTTTCAATCACCTTTGGG 39589 Query 79852 AGGTCGTCGCCGTGGATGCCGACCGCGACGCGCATG 79887 | | || |||||||| || | ||||| | |||| Sbjct 39590 ATATTATCACCGTGGATACCAATGGCGACTCTCATG 39625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548524642299120