Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20kashinagacola_20[genbank_20GCA_5F001599075.1_202016- 03-01] 23 sequences; 12,320,962 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq5 107 2e-18 seq3 98.7 1e-15 >seq14 Length=138463 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| | || || ||||| || ||| | |||||||| || | Sbjct 121010 ATGCAAATTTTCGTTAAGACCTTAACTGGTAAGACCATCACTTTAGAGGTTGAATCCTCT 120951 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| |||| ||||| || ||||| || || || || || || Sbjct 120950 GACACTATTGACAATGTCAAGTCTAAGATTCAAGATAAGGAAGGTATCCCACCTGATCAA 120891 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | |||| ||||||||||||||| | || |||| | | || || | || || || Sbjct 120890 CAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTTTATCTGATTACAAC 120831 Query 27586 GTCCAAAAGGAATCCAC 27602 | ||||||||||| || Sbjct 120830 ATTCAAAAGGAATCAAC 120814 >seq5 Length=915096 Score = 107 bits (118), Expect = 2e-18 Identities = 124/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 27452 AGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAA 27511 ||||||| || ||||| ||||| ||| | || ||||||| || |||||||| || | Sbjct 587746 AGGTTGAATCCTCTGATACCATTGACAATGTCAAATCTAAAATCCAAGACAAGGAAGGTA 587687 Query 27512 TTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCC 27571 | || ||||| || || | |||| ||||||||||||||| | || |||| | | || | Sbjct 587686 TCCCACCAGATCAACAAAGATTAATCTTTGCTGGTAAGCAATTAGAAGATGGTAGAACTC 587627 Query 27572 TAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618 | | ||||| || |||||||||||||||| | || | |||||| Sbjct 587626 TTTCCGACTACAACATCCAAAAGGAATCCACCTTGCACTTGGTCTTG 587580 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/180 (74%), Gaps = 4/180 (2%) Strand=Plus/Plus Query 80047 TAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTT- 80105 |||||||| || ||||| | ||||||||||| ||||| | |||||| ||| | | ||| Sbjct 37916 TAGTACATACCGGTCTTTAAACCCTTCTTCCAACCGTAGAAGTGCATGGAAGTCAACTTA 37975 Query 80106 CGCA-AGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCC 80164 | || ||| ||| | ||| || | |||||||| ||| ||||| ||| | | |||| | Sbjct 37976 CCCATAGT-TGGAGCTCT-CAAGTGGATGTTCATAGATTGAGATTGATCAACGTAAGCAC 38033 Query 80165 CACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGTACGATACA 80224 | | || || | ||| ||||| || |||||||| | ||||||||| || || ||||| Sbjct 38034 CTCTGTCAGCAGACATATCAATGATAGACTTTTGAGAAATTTCCCAAACGGTCTTATACA 38093 >seq3 Length=1585198 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | || || ||||| || ||| | ||||| || || | Sbjct 1231334 ATGCAAATTTTTGTTAAGACCTTAACAGGTAAGACCATCACTTTAGAGGTCGAATCCTCT 1231393 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| | ||| | || || || |||||||| || || || || || || Sbjct 1231394 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGATCAA 1231453 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || || || ||||||||| | || || | | | ||| | | || || || Sbjct 1231454 CAAAGATTGATCTTCGCCGGTAAGCAATTAGAAGACGGTAGAACCTTGTCCGATTACAAC 1231513 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTT 27617 ||||||||||||||||| | || | ||||| Sbjct 1231514 ATCCAAAAGGAATCCACTTTACACTTGGTCTT 1231545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310236035760