Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 seq17 98.7 8e-16 seq40 89.7 4e-13 >seq3 Length=1000385 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || || ||||| || || || |||||| ||| ||| | | Sbjct 936521 AATGCAAATTTTTGTTAAGACCTTGACTGGTAAGACAATTACCTTGGAAGTTGAATCTTC 936462 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || ||||| || || ||||| |||||| | || ||||| Sbjct 936461 CGACACCATTGACAATGTCAAGTCCAAGATCCAAGATAAGGAAGGTATCCCACCTGATCA 936402 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||||||| | |||||||| || || ||||||||||| | ||| || |||| ||||| Sbjct 936401 ACAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAA 936342 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| ||| | ||| |||| || |||| |||| || Sbjct 936341 CATTCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGG 936294 >seq17 Length=626534 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || || ||||||||| | || ||||| || || ||||||||| Sbjct 620883 GACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAA 620824 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | |||| || | || ||||| |||||||||||||| ||||||||| |||| || Sbjct 620823 GATGGTAGAACTTTGTCTGACTACAACATTCAAAAGGAATCCACTCTTCACTTGGTTTTG 620764 Query 25248 CGATTACGAGGAGG 25261 |||| |||| || Sbjct 620763 AGATTGAGAGGTGG 620750 >seq40 Length=167105 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || || ||||||||| | || || || || || ||||| ||| Sbjct 19629 GATAAGGAAGGTATTCCACCTGACCAACAAAGATTGATTTTCGCTGGTAAGCAATTAGAA 19688 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || | || ||||| || ||||||||||| || |||||| ||||||| Sbjct 19689 GATGGTAGAACYTTGTCTGACTACAACATYCAAAAGGAATCAACWCTTCACTTGGTGTTG 19748 Query 25248 CGATTACGAGGAGG 25261 |||| |||| || Sbjct 19749 AGATTGAGAGGTGG 19762 Score = 86.0 bits (94), Expect = 5e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| || ||| | || |||||||| ||| | || || || || || ||||| ||| Sbjct 19857 GATAAGGAGGGTATTCCACCTGATCAACAGAGATTAATTTTCGCTGGTAAGCAATTAGAA 19916 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| | ||| || | || ||||| || ||||||||||| ||||||||| |||| ||| Sbjct 19917 GATGGTAGAACYTTGTCTGACTACAACATCCAAAAGGAATCAACTCTTCACTTGGTTTTA 19976 Query 25248 CGATTACGAGGAGG 25261 |||| |||| || Sbjct 19977 AGATTGAGAGGTGG 19990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410796209222852