Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq40 104 3e-17 seq17 102 1e-16 seq3 98.7 1e-15 >seq40 Length=167105 Score = 104 bits (114), Expect = 3e-17 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || ||||| || | || ||||| ||| | || || || || || Sbjct 19762 CCACCTCTCAATCTCAACACCAAGTGAAGWGTTGATTCCTTTTGR-ATGTTGTAGTCAGA 19704 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | ||| |||||||| || ||||| |||||||||||||| || || || || Sbjct 19703 CAARGTTCTACCATCTTCTAATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGG 19644 Query 146170 AATTCCTTCTTTATCTTG 146187 ||| ||||| |||||||| Sbjct 19643 AATACCTTCCTTATCTTG 19626 >seq17 Length=626534 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || ||||| || | ||| ||||| ||| || || || || || || Sbjct 620750 CCACCTCTCAATCTCAAAACCAAGTGAAGAGTGGATTCCTTTTGA-ATGTTGTAGTCAGA 620808 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | |||||| | ||| || ||||| || |||||||||||||||||||| || || || || Sbjct 620809 CAAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGG 620868 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| || ||||| Sbjct 620869 GATACCTTCCTTGTCTTG 620886 >seq3 Length=1000385 Score = 98.7 bits (108), Expect = 1e-15 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 |||||||| | ||| || ||||| || ||||| ||||| ||| || || || || || || Sbjct 936294 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGA-ATGTTGTAGTCGGA 936352 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||||| | || || ||||| || || ||||| ||||||||||| ||||| || || Sbjct 936353 CAAGGTTCTACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGATCAGGTGG 936412 Query 146170 AATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 936413 GATACCTTCCTTATCTTG 936430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743525303298560