Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03-
01] 118 sequences; 24,978,438 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq3 109 4e-19
seq17 107 1e-18
seq40 100 2e-16
>seq3
Length=1000385
Score = 109 bits (120), Expect = 4e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || ||||| ||||||||||||||||||| || ||| ||| ||||||
Sbjct 936312 ACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTCTTCC 936371
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| || || ||| |||| | |||||||||||| || | |||||||||||
Sbjct 936372 AATTGCTTACCGGCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTGG 936431
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|| | |||||| | ||| ||||| | || ||| | ||| || | ||
Sbjct 936432 ATCTTGGACTTGACATTGTCAATGGTGTCGGAAGATTCAACTTCCAAGGTAATTGTCTTA 936491
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATT 18326
|| ||||| || || |||||||||||||||
Sbjct 936492 CCAGTCAAGGTCTTAACAAAAATTTGCATT 936521
>seq17
Length=626534
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||| || ||||| ||||||||||||||||| | || ||| ||| |||||||
Sbjct 620768 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCC 620827
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| || || ||| | || | ||||||||| || || | |||||||| ||
Sbjct 620828 AATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 620887
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|| | |||||| | ||| |||||| || ||| || | |||||| | ||
Sbjct 620888 ATCTTGGACTTGACATTGTCAATGGTGTCAGAGGATTCGACCTCCAAAGTGATGGTCTTA 620947
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
|| || | || || |||||||||||||| ||
Sbjct 620948 CCTGTAAGGGTCTTAACAAAAATTTGCATCTT 620979
>seq40
Length=167105
Score = 100 bits (110), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 4/211 (2%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||| |||||||| ||||| ||||||||||| | || ||| ||| ||||||
Sbjct 19972 ACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCAGACAARGTTCTACCATCTTCT 19913
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234
||||| || || || | || | ||| |||||||| || | || |||||||| ||
Sbjct 19912 AATTGCTTACCAGCGAAAATTAATCTCTGTTGATCAGGTGGAATACCCTCCTTATCTTGG 19853
Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294
|||| | || || | ||| |||||| | || ||| | ||||| | |
Sbjct 19852 ATCTTTGAT--TTAACGTTATCAATGGTGTCAGATGATTCAACTTCCAAAGTGATAGTCT 19795
Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325
| || ||||||||||| ||||| ||||||||
Sbjct 19794 TACCAGTCAATGTTTTAACAAAGATTTGCAT 19764
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||| |||||||| ||||| ||||||||||| | || ||| ||| ||||||
Sbjct 19744 ACCAAGTGAAGWGTTGATTCCTTTTGRATGTTGTAGTCAGACAARGTTCTACCATCTTCT 19685
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232
||||| || || || | || | ||||||||| || || | |||||||||||
Sbjct 19684 AATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATC 19629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379343454455910
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |