Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 109 4e-19 seq17 107 1e-18 seq40 100 2e-16 >seq3 Length=1000385 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||||||||||||||||| || ||| ||| |||||| Sbjct 936312 ACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTCTTCC 936371 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | |||||||||||| || | ||||||||||| Sbjct 936372 AATTGCTTACCGGCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTGG 936431 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||| | || ||| | ||| || | || Sbjct 936432 ATCTTGGACTTGACATTGTCAATGGTGTCGGAAGATTCAACTTCCAAGGTAATTGTCTTA 936491 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||| || || ||||||||||||||| Sbjct 936492 CCAGTCAAGGTCTTAACAAAAATTTGCATT 936521 >seq17 Length=626534 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| || ||||| ||||||||||||||||| | || ||| ||| ||||||| Sbjct 620768 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCC 620827 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| | || | ||||||||| || || | |||||||| || Sbjct 620828 AATTGCTTACCAGCAAAAATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 620887 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| |||||| || ||| || | |||||| | || Sbjct 620888 ATCTTGGACTTGACATTGTCAATGGTGTCAGAGGATTCGACCTCCAAAGTGATGGTCTTA 620947 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 || || | || || |||||||||||||| || Sbjct 620948 CCTGTAAGGGTCTTAACAAAAATTTGCATCTT 620979 >seq40 Length=167105 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| |||||||| ||||| ||||||||||| | || ||| ||| |||||| Sbjct 19972 ACCAAGTGAAGAGTTGATTCCTTTTGGATGTTGTAGTCAGACAARGTTCTACCATCTTCT 19913 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GG 18234 ||||| || || || | || | ||| |||||||| || | || |||||||| || Sbjct 19912 AATTGCTTACCAGCGAAAATTAATCTCTGTTGATCAGGTGGAATACCCTCCTTATCTTGG 19853 Query 18235 CAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTT 18294 |||| | || || | ||| |||||| | || ||| | ||||| | | Sbjct 19852 ATCTTTGAT--TTAACGTTATCAATGGTGTCAGATGATTCAACTTCCAAAGTGATAGTCT 19795 Query 18295 TGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || ||||||||||| ||||| |||||||| Sbjct 19794 TACCAGTCAATGTTTTAACAAAGATTTGCAT 19764 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| |||||| |||||||| ||||| ||||||||||| | || ||| ||| |||||| Sbjct 19744 ACCAAGTGAAGWGTTGATTCCTTTTGRATGTTGTAGTCAGACAARGTTCTACCATCTTCT 19685 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||||| || || || | || | ||||||||| || || | ||||||||||| Sbjct 19684 AATTGCTTACCAGCGAAAATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTATC 19629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343454455910