Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq12 96.9 3e-15 seq3 86.0 6e-12 >seq12 Length=722896 Score = 96.9 bits (106), Expect = 3e-15 Identities = 284/427 (67%), Gaps = 13/427 (3%) Strand=Plus/Plus Query 52529 TACTCAACGCTTTTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAAT 52588 || |||| ||| |||| || ||||| ||| | | |||| | || ||||| |||| || Sbjct 313910 TATTCAATGCTATTGATAACGTTCCATGTATCAGAGAAAAAGCGGACTGGGCTTTGAGAT 313969 Query 52589 GGATCGAAAACGACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAG 52648 |||| | || || || |||| ||| | |||| || |||||| || || | Sbjct 313970 GGATTTCTGATGAAAATGCTTTGTTTGGTGAAAGATTGGTTGCCTTTGCTGCTGTTGAGG 314029 Query 52649 GTGTGtttttttCGGGTAGTTTTGCGGCAATATTTTACATCAAAACCTTGGGCATAATGC 52708 || | || || || ||| |||||| || || || | | || | || | |||| Sbjct 314030 GTATTTTCTTCTCTGGTTCTTTTGCTGCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGC 314089 Query 52709 CCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTG 52768 | || | || || ||||| ||||| | | || ||||| |||| || ||||| | Sbjct 314090 CAGGTTTGACTTTCTCTAACGAATTGATCTGTAGAGATGAAGGTCTGCATACTGATTTCG 314149 Query 52769 CGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTAGACA 52828 | ||||||| ||| | | | | || || || | || ||||| ||||| | | || Sbjct 314150 CTTGTTTGT--TATTCT-CTCAC-TTGAACAACACCC--CAGATGAAGAAATTGTTGCCA 314203 Query 52829 TGTTTAAA---GAGGCCGTCGACATTGAAAA-AGAGTTTTTTACGGACGCTTTACCCGTA 52884 | ||| || ||||| ||||||||||| ||| | || || || ||||| || || Sbjct 314204 AGATTATCACTGAAGCCGTTGACATTGAAAAGAGA-TACTTCACTGATGCTTTGCCAGTC 314262 Query 52885 TCATTGTTGGGCATGAAC-GCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAG 52943 |||||||| |||||| | || | ||||||| | ||| | || |||||||| ||||| Sbjct 314263 AAGTTGTTGGGTATGAACTGTGA-CTTGATGTGTCAATACGTTGAATTTGTTGCTGACAG 314321 Query 52944 ACTGTTG 52950 | ||||| Sbjct 314322 ATTGTTG 314328 >seq3 Length=1000385 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | |||||| ||||| | || || || ||||||||||| || ||| | Sbjct 936294 CCACCTCTCAATCTCAAAACCAAGTGCAAAGTGGATTCCTTTTGAATGTTGTAGTCGGAC 936353 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || |||||| | || ||||| ||| |||||| | ||| ||||| || || Sbjct 936354 AAGGTTCTACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGATCAGGTGGG 936413 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || || | | || | ||||||| | || || Sbjct 936414 ATACCTTCCTTATCTTGGATCTTGGACTTGACATTGTCAATGGTGTCGGAAGATTCAACT 936473 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || ||||| || || || || |||||||| Sbjct 936474 TCCAAGGTAATTGTCTTACCAGTCAAGGTCTTAACAAAAATTTGCAT 936520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063268305600