Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 228 2e-54 seq40 150 4e-31 seq3 138 3e-27 seq17 136 9e-27 seq28 86.0 1e-11 >seq12 Length=722896 Score = 228 bits (252), Expect = 2e-54 Identities = 598/904 (66%), Gaps = 15/904 (2%) Strand=Plus/Plus Query 268700 AGATTTGTGATATTTCCAATACAGCATGGTGATATATGGAGGATGTACAAACAGGCCGTT 268759 |||||||| | || ||||| || | ||| || ||| |||||||| || | Sbjct 313564 AGATTTGTTTTGTTCCCAATCAAGTACCATGAAATCTGGCAAATGTACAAGAAGCAAGAA 313623 Query 268760 GCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGACTTAATAGATTGGAAAAAT 268819 |||||||| ||||||| ||||| | ||| ||||| | || || || ||||| || Sbjct 313624 GCTTCTTTCTGGACTGCTGAAGAGATTGATTTGTCTAAGGATTTGGATGACTGGAACAAC 313683 Query 268820 ---TTAAAACCAGAAGAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGCAGTTAGT 268876 || || | | |||||| || || ||| || | || || ||||| | | Sbjct 313684 AAGTTGAATGCTAATGAAAGATATTTCATGTCTAGAGTTTTGGCTTTCTTTGCTGCTTCC 313743 Query 268877 GATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGATTCCTGAA 268936 |||||||| || || ||||| | || || || |||| | || || || |||||||| Sbjct 313744 GATGGTATTGTCAATGAAAACTTGGTTGAAAACTTCTCTGCTGAAGTTCAAGTTCCTGAA 313803 Query 268937 GCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGATGTACAGT 268996 || | ||||| ||||| ||||| || || ||||| || || || || | ||| | Sbjct 313804 GCTAAGTGTTTCTACGGTTTCCAAATCATGATGGAAAACATCCACTCTGAAACTTACTCT 313863 Query 268997 CTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATTTTCTTCTAT- 269055 ||||| || || |||||| | | ||| || ||| | |||| | |||| Sbjct 313864 CTATTGATTGACACTTATGTCAAGGATCCAAAGGAAGCTGATTTCTTATTCAATGCTATT 313923 Query 269056 GAGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAACGAT-- 269113 || ||| | | ||| | ||| ||||| | || |||||| ||| |||||| ||| Sbjct 313924 GATAACGTTCCA-TGTATCAGAGAAAAAGCGGACTGGGCTTTGAGATGGATTTCTGATGA 313982 Query 269114 -AGCGCGCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTC 269172 | || | || ||||| || ||||| ||||| ||||| || ||||| ||||| || Sbjct 313983 AAATGCTTTGTTTGGTGAAAGATTGGTTGCCTTTGCTGCTGTTGAGGGTATTTTCTTCTC 314042 Query 269173 GGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTT 269232 || |||||||| || ||||| ||||||||||| ||||| | |||||||| || ||||| Sbjct 314043 TGGTTCTTTTGCTGCCATCTTCTGGTTGAAGAAGAGAGGTTTGATGCCAGGTTTGACTTT 314102 Query 269233 CTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTGTTTATTATT 269292 ||||||||||||||| | || || |||||| | || || ||||||||||| ||||| Sbjct 314103 CTCTAACGAATTGATCTGTAGAGATGAAGGTCTGCATACTGATTTCGCTTGTTTGTTATT 314162 Query 269293 TACTAATTATCTTTCAC-ACAAACCTTCTCAAGATAGAGTATACGAAATTATAGATTCAG 269351 || | ||| || ||| || | |||| | || | | ||||| | || Sbjct 314163 CTCTCA----CTTGAACAACACCCCAGATGAAGAAATTGTTGCCAAGATTATCACTGAAG 314218 Query 269352 CTGTTTCTGTAGAAACAGA-ATTTCTAACGGAAGCTCTATCTATCGATCTTATCGGTATG 269410 | ||| | |||| ||| || | || || ||| | | || | | | |||||| Sbjct 314219 CCGTTGACATTGAAA-AGAGATACTTCACTGATGCTTTGCCAGTCAAGTTGTTGGGTATG 314277 Query 269411 AATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTGATAGATTGCTGGTGTCTTTA 269470 || | | | |||| |||| || | || || |||| |||||| |||| |||| Sbjct 314278 AACTGTGACTTGATGTGTCAATACGTTGAATTTGTTGCTGACAGATTGTTGGTTGCTTTG 314337 Query 269471 GGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTTTTATGGAGAATATATCATTA 269530 || | | || | || ||||| ||| || || || ||||| ||||| || || Sbjct 314338 GGATGCAAGAAGATCTACAACGTCACAAACCCATTCGACTTCATGGAAAATATTTCCTTG 314397 Query 269531 GAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACTATCAGAAAATGGGTGTAATG 269590 | |||||| |||| |||||||||||| | || | ||||||| || ||||| ||| Sbjct 314398 GCTGGTAAGACTAACTTCTTCGAGAAGAGAGTTTCTGACTATCAAAAGGCTGGTGTTATG 314457 Query 269591 TCTA 269594 ||| Sbjct 314458 GCTA 314461 >seq40 Length=167105 Score = 150 bits (166), Expect = 4e-31 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || || || || |||||||| | |||||||| ||||||| ||| || ||| Sbjct 19960 GTTGATTCCTTTTGGATGTTGTAGTCAGACAARGTTCTACCATCTTCTAATTGCTTACCA 19901 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||||| |||||||||||||| || || || || ||||| || ||||||| ||| Sbjct 19900 GCGAAAATTAATCTCTGTTGATCAGGTGGAATACCCTCCTTATCTTGGATCTTTGATTTA 19841 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || | ||| || || | || |||||||||||||| | |||| Sbjct 19840 ACGTTATCAATGGTGTCAGATGATTCAACTTCCAAAGTGATAGTCTTACCAGTCAATGTT 19781 Query 104543 TTTACAAATATCTGCAt 104559 || ||||| || ||||| Sbjct 19780 TTAACAAAGATTTGCAT 19764 >seq3 Length=1000385 Score = 138 bits (152), Expect = 3e-27 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || ||||| || ||||| || | |||||||||||||| | ||| Sbjct 936318 TGCAAAGTGGATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAATTGC 936377 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| || | || ||||||||||| || || ||||| ||||| || ||||| Sbjct 936378 TTACCGGCAAAGATCAATCTTTGTTGATCAGGTGGGATACCTTCCTTATCTTGGATCTTG 936437 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | ||| ||| || ||| || || | ||||| ||||||||||| Sbjct 936438 GACTTGACATTGTCAATGGTGTCGGAAGATTCAACTTCCAAGGTAATTGTCTTACCAGTC 936497 Query 104537 AGTGTTTTTACAAATATCTGCAtt 104560 | || || ||||| || |||||| Sbjct 936498 AAGGTCTTAACAAAAATTTGCATT 936521 >seq17 Length=626534 Score = 136 bits (150), Expect = 9e-27 Identities = 150/200 (75%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| || ||||| || |||||||| | ||||||||| ||||| | ||| || ||| Sbjct 620780 GTGGATTCCTTTTGAATGTTGTAGTCAGACAAAGTTCTACCATCTTCCAATTGCTTACCA 620839 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | || ||||| ||||| || || ||||| || || || ||||| | || Sbjct 620840 GCAAAAATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGGACTTG 620899 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||| || | ||| ||||| | || || |||||||| ||||| || Sbjct 620900 ACATTGTCAATGGTGTCAGAGGATTCGACCTCCAAAGTGATGGTCTTACCTGTAAGGGTC 620959 Query 104543 TTTACAAATATCTGCAtttt 104562 || ||||| || ||||| || Sbjct 620960 TTAACAAAAATTTGCATCTT 620979 >seq28 Length=323176 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 165098 GATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATATAGAGCTA 165157 |||||||||||||||| || ||||| | | || || || |||||||| ||| | Sbjct 85423 GATAAGGATGAATGGACCACATGGAACGCTAGATCTGACCCAGTGTTACATATTGAGTTG 85482 Query 165158 AGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAGCGAAGATA 165217 ||||||||||| ||||| || | | || || || |||| |||| ||| ||||| Sbjct 85483 AGAAGATGGGCTGATATTTTGATCGTTGCTCCACTATCAGCTAACACTTTGAGTAAGATT 85542 Query 165218 GCTAACGGTATCTGTAATAACTTGTTAACGTGTATAGTTAGAGCGTGGAATA 165269 ||| ||||| ||| |||| | || ||| | | ||||||| ||||||| Sbjct 85543 GCTTTGGGTATTTGTGATAATCTTTTGACGAATGTGATTAGAGCATGGAATA 85594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151396659229544