Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq17 129 5e-25 seq40 123 2e-23 seq3 116 3e-21 >seq17 Length=626534 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || ||||| ||||||| | || || || || ||| Sbjct 620976 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAGACCATCACTTTGGAGGTCGAATCCTCT 620917 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| ||||| || |||||||||| Sbjct 620916 GACACCATTGA--CAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 620859 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 |||| | | |||||||| || || ||||| ||||||| | | ||| || || |||| Sbjct 620858 AACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTACA 620799 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| |||||||| || || || || | || | ||||| || Sbjct 620798 ACATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGG 620750 >seq40 Length=167105 Score = 123 bits (136), Expect = 2e-23 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || ||||| ||||| | ||||| | ||||| || || ||| Sbjct 19764 ATGCAAATCTTTGTTAAAACATTGACTGGTAAGACTATCACTTTGGAAGTTGAATCATCT 19823 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || | || ||| ||| || || || || ||||||||||| || Sbjct 19824 GACACCATTGA-TAACGTTAAATCAAAGATCCAAGATAAGGAGGGTATTCCACCTGATCA 19882 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| | | ||||| || || || ||||||||||||| | | || || || ||||| Sbjct 19883 ACAGAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTAGAACYTTGTCTGACTACAA 19942 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 || ||||| ||||| || || || || || |||| | ||||| || || || Sbjct 19943 CATCCAAAAGGAATCAACTCTTCACTTGGTTTTAAGATTGAGAGGTGGTAACTA 19996 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||| ||||||||||||||||| | | ||||| || || || ||||||||| Sbjct 19629 GATAAGGAAGGTATTCCACCTGACCAACAAAGATTGATTTTCGCTGGTAAGCAATTAGAA 19688 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | | || || || ||||| || ||||| ||||| || || || || ||| | Sbjct 19689 GATGGTAGAACYTTGTCTGACTACAACATYCAAAAGGAATCAACWCTTCACTTGGTGTTG 19748 Query 25212 AGGCTAAGAGGAGG 25225 || | ||||| || Sbjct 19749 AGATTGAGAGGTGG 19762 >seq3 Length=1000385 Score = 116 bits (128), Expect = 3e-21 Identities = 148/202 (73%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 ||||||||||| ||||| ||||| ||||| ||||| | || || | ||||| || || Sbjct 936523 ACAATGCAAATTTTTGTTAAGACCTTGACTGGTAAGACAATTACCTTGGAAGTTGAATCT 936464 Query 25056 TCTGACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 || ||||| || || || || ||| || ||| || || ||||| || ||||||| Sbjct 936463 TCCGACACCATTGA--CAATGTCAAGTCCAAGATCCAAGATAAGGAAGGTATCCCACCTG 936406 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | ||||| | | || |||||||| || ||||| ||||| | | | || || ||| | Sbjct 936405 ATCAACAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACT 936346 Query 25174 ACAATATTCAAAAAGAATCCAC 25195 |||| |||||||| |||||||| Sbjct 936345 ACAACATTCAAAAGGAATCCAC 936324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327376820170