Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 145 6e-30 seq17 141 8e-29 seq40 129 5e-25 >seq3 Length=1000385 Score = 145 bits (160), Expect = 6e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||||||||| || || || ||||| || | || | ||||| ||| | || Sbjct 936520 ATGCAAATTTTTGTTAAGACCTTGACTGGTAAGACAATTACCTTGGAAGTTGAATCTTCC 936461 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || ||||| ||||| ||||| ||||| |||||| Sbjct 936460 GACACCATTGACAATGTCAAGTCCAAGATCCAAGATAAGGAAGGTATCCCACCTGATCAA 936401 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || |||||||| || || || || || | ||| | ||||| |||||| Sbjct 936400 CAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAAC 936341 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| |||||||| | || || |||||| ||||| | || ||| Sbjct 936340 ATTCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGGT 936293 >seq17 Length=626534 Score = 141 bits (156), Expect = 8e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||||||||||||||| || | || ||||| || ||||| | || || ||| || Sbjct 620979 AAGATGCAAATTTTTGTTAAGACCCTTACAGGTAAGACCATCACTTTGGAGGTCGAATCC 620920 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | ||| || |||| || || ||||||||||| ||||| ||||| || Sbjct 620919 TCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 620860 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 |||||| | | || ||||| || || || || || ||| | || | || || ||| Sbjct 620859 CAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTAC 620800 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||||| |||||||| | || || |||||| ||||| | || ||| Sbjct 620799 AACATTCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGT 620749 >seq40 Length=167105 Score = 129 bits (142), Expect = 5e-25 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||||||||| || || ||||| || ||||| | ||||| ||| | | Sbjct 19764 ATGCAAATCTTTGTTAAAACATTGACTGGTAAGACTATCACTTTGGAAGTTGAATCATCT 19823 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | ||| ||| || ||||| ||||||||||||||||| |||||| Sbjct 19824 GACACCATTGATAACGTTAAATCAAAGATCCAAGATAAGGAGGGTATTCCACCTGATCAA 19883 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || || || || || || ||||| ||| | || | || || |||||| Sbjct 19884 CAGAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTAGAACYTTGTCTGACTACAAC 19943 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || ||||| ||||| || | || || ||||| ||||| | || ||| Sbjct 19944 ATCCAAAAGGAATCAACTCTTCACTTGGTTTTAAGATTGAGAGGTGGT 19991 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/144 (72%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || ||||| ||||| ||||||||||| || |||||| | | || || || || || Sbjct 19620 AAGATWCAAGATAAGGAAGGTATTCCACCTGACCAACAAAGATTGATTTTCGCTGGTAAG 19679 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 || ||||| ||| | || | || || |||||||| ||||| ||||| || | || Sbjct 19680 CAATTAGAAGATGGTAGAACYTTGTCTGACTACAACATYCAAAAGGAATCAACWCTTCAC 19739 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||| ||||| | || ||| Sbjct 19740 TTGGTGTTGAGATTGAGAGGTGGT 19763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727396378670