Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ambrosiozyma_20monospora_20[genbank_20GCA_5F001599995.1_202016-03- 01] 118 sequences; 24,978,438 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12 232 1e-55 seq40 141 1e-28 seq3 123 4e-23 seq17 122 1e-22 >seq12 Length=722896 Score = 232 bits (256), Expect = 1e-55 Identities = 568/845 (67%), Gaps = 38/845 (4%) Strand=Plus/Minus Query 17879 ACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAAATTCATAAAATCAAAT 17938 ||| | ||||||||||| || ||||| || |||| || || | ||| || || ||| Sbjct 314429 ACTCTCTTCTCGAAGAAGTTAGTCTTACCAGCCAAGGAAATATTTTCCATGAAGTCGAAT 314370 Query 17939 GGATTAGTG--GTTTTATAATATTTTTCTTGTATT--AATTCGTATAATAATCTATCTGC 17994 || || ||| ||| || | | |||||| || || | || ||||| || || Sbjct 314369 GGGTTTGTGACGTTGTAGA----TCTTCTTGCATCCCAAAGCAACCAACAATCTGTCAGC 314314 Query 17995 TACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAGTAGTCTGAAAGGTAG 18054 |||||||| || ||||| ||||||| || || |||||||| | | ||| || | Sbjct 314313 AACAAATTCAACGTATTGACACATCAAGTCACAGTTCATACCCAACAACTTGACTGGCAA 314254 Query 18055 AGCATCAATAATAAAT-TCTTTCTCTATCTCAACAGACTCTTTTATTATGTTTATTACCC 18113 ||||||| | | || ||||| || || ||||| | || | || || || || Sbjct 314253 AGCATCAGTGAAGTATCTCTTT-TCAATGTCAACGGCTTCAGTGATAATCTTGGCAACA- 314196 Query 18114 TAGATTTTGGCAATT----TATTAATTATGTGATTATAATATAATAAACACGCAAAATCA 18169 |||| || | | || | | |||| | |||| ||||| || |||||| Sbjct 314195 ---ATTTCTTCATCTGGGGTGTTGTTCAAGTGAG---AGAATAACAAACAAGCGAAATCA 314142 Query 18170 GTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCCGGGCATTATA 18229 || || | |||||||||||| | || ||||||||| || || || || ||||| | | Sbjct 314141 GTATGCAGACCTTCATCTCTACAGATCAATTCGTTAGAGAAAGTCAAACCTGGCATCAAA 314082 Query 18230 CCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATATACCCTCAAC- 18288 ||||| || || | ||| || || | || ||| || ||| ||||| ||||||||||| Sbjct 314081 CCTCTCTTCTTCAACCAGAAGATGGCAGCAAAAGAACCAGAGAAGAAAATACCCTCAACA 314022 Query 18289 GCACGCGAACGCTATTAATCTTTCAGCAAA-ACTGTATTTATTGCTCAG-TATCCATTTT 18346 ||| || || || | ||||||||| |||| | | ||| || |||| |||||| | Sbjct 314021 GCA-GCAAAGGCAACCAATCTTTCACCAAACAAAGCATT--TTCATCAGAAATCCATCTC 313965 Query 18347 TGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATT---AAACAAA 18403 ||||| || ||| ||||| || | | || |||||||| || ||| Sbjct 313964 AAAGCCCAGTCCGCTTTTTCTCTGATACATGGAACGTTATCAATAGCATTGAATAAGAAA 313905 Query 18404 TCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAA 18463 ||| | || |||||| ||| || | ||||||||| || || | ||| || ||||||| Sbjct 313904 TCAGC--TTCCTTTGG-ATCCTTGACATAAGTGTCAATCAATAGAGAGTAAGTTTCAGAG 313848 Query 18464 TGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATC 18523 || ||| ||||||| || || |||| || || | |||| || ||| ||||| Sbjct 313847 TGGATGTTTTCCATCATGATTTGGAAACCGTAGAAACACTTAGCTTCAGGAACTTGAACT 313788 Query 18524 TCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAAT 18583 || | | || |||| ||||| || ||||| || ||||| || | || || || || Sbjct 313787 TCAGCAGAGAAGTTTTCAACCAAGTTTTCATTGACAATACCATCGGAAGCAGCAAAGAAA 313728 Query 18584 GCCAAAACATATTTA-ATGAAATGTTTTTCATTATCCTTGA---GATTGTTCCATTCATC 18639 |||||||| | | | ||||||| | |||||||| | || | |||||||| ||||| Sbjct 313727 GCCAAAAC-TCTAGACATGAAATATCTTTCATTAGCATTCAACTTGTTGTTCCAGTCATC 313669 Query 18640 TATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCTGTTTGTA 18699 | ||| || || | ||||| ||||| | ||||| ||||| | ||| || ||||| Sbjct 313668 CAAATCCTTAGACAAATCAATCTCTTCAGCAGTCCAGAAAGAAGCTTCTTGCTTCTTGTA 313609 Query 18700 CATTT 18704 ||||| Sbjct 313608 CATTT 313604 >seq40 Length=167105 Score = 141 bits (156), Expect = 1e-28 Identities = 170/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||||||||||| || ||||| || || ||||| ||| ||| Sbjct 19764 ATGCAAATCTTTGTTAAAACATTGACTGGTAAGACTATCACTTTGGAAGTTGAATCATCT 19823 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| || || |||||||| || || || || || || ||| Sbjct 19824 GACACCATTGATAACGTTAAATCAAAGATCCAAGATAAGGAGGGTATTCCACCTGATCAA 19883 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| |||| || |||||||| | |||||| ||||| || || || || | Sbjct 19884 CAGAGATTAATTTTCGCTGGTAAGCAATTAGAAGATGGTAGAACYTTGTCTGACTACA-- 19941 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 | ||||||| || | || ||||| || || |||||||| ||||| ||| Sbjct 19942 ACATCCAAAAGGAATCAACTCTTCACTTGGTTTTAAGATTGAGAGGTGGT 19991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/188 (72%), Gaps = 2/188 (1%) Strand=Plus/Plus Query 155864 ATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGA 155923 |||| | |||||| ||||| | ||| || || || || || |||||||| || Sbjct 19577 ATTATAGGTCGAATCATCTGACACCATTGACAATGTTAAGTCCAAGATWCAAGATAAGGA 19636 Query 155924 AGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAG 155983 ||| || || || || |||||||||||||||| || |||||||| | |||||| || Sbjct 19637 AGGTATTCCACCTGACCAACAAAGATTGATTTTCGCTGGTAAGCAATTAGAAGATGGTAG 19696 Query 155984 AACTTTATCAGATTATAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAA 156042 ||| || || || || || || | ||| || | || ||||| || ||||| ||||| | Sbjct 19697 AACYTTGTCTGACTACAACAT-YCAAAAGGAATCAACWCTTCACTTGGTGTTGAGATTGA 19755 Query 156043 GAGGCGGT 156050 |||| ||| Sbjct 19756 GAGGTGGT 19763 >seq3 Length=1000385 Score = 123 bits (136), Expect = 4e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || |||||||| || || ||||| || ||||| ||| ||| Sbjct 936521 AATGCAAATTTTTGTTAAGACCTTGACTGGTAAGACAATTACCTTGGAAGTTGAATCTTC 936462 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || || || |||||||| ||||| || || || || || Sbjct 936461 CGACACCATTGACAATGTCAAGTCCAAGATCCAAGATAAGGAAGGTATCCCACCTGATCA 936402 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||||||||||| | |||||||||||| | ||||| ||||| || || || || || Sbjct 936401 ACAAAGATTGATCTTTGCCGGTAAGCAATTGGAAGACGGTAGAACCTTGTCCGACTACAA 936342 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| || | || | || || || || ||||| ||||| ||| Sbjct 936341 CAT-TCAAAAGGAATCCACTTTGCACTTGGTTTTGAGATTGAGAGGTGGT 936293 >seq17 Length=626534 Score = 122 bits (134), Expect = 1e-22 Identities = 169/234 (72%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 155819 TAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGA 155878 ||| |||||||| ||| |||| || | || || || || || || || || |||||| Sbjct 620980 TAAGATGCAAATTTTTGTTAAGACCCTTACAGGTAAGACCATCACTTTGGAGGTCGAATC 620921 Query 155879 TTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGA 155938 ||||| | ||| || || || || || ||||| || ||||| || || || || Sbjct 620920 CTCTGACACCATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGA 620861 Query 155939 ACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTA 155998 |||||||||||||||| ||| |||||||| | |||||| |||||||| || || || Sbjct 620860 CCAACAAAGATTGATTTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCTGACTA 620801 Query 155999 TAATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 || || || ||| || | || ||||| || || || ||||| ||||| |||| Sbjct 620800 CAACAT-TCAAAAGGAATCCACTCTTCACTTGGTTTTGAGATTGAGAGGTGGTG 620748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731870920488800